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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctttagtttgcattctcattagtcattaccaataattttgcatgcttaacgttcattcaattgcttacggtgttcgtgtaaccgattgcttttatttcctatatgtatgctcactgctctgtcaagtactacttgacggtcgtataattttggttttgtatagGTCATGCACATTGCAGCTGCAACCGAGATTACTTCGAGGCTAATCCCTAGTTTGAAAAATTTGCATAGCTCTTTGGAATCTAAG

Basic information

species Arabidopsis thaliana
transcript AT5G50950.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125214959|gb|EL229197.1|EL229197
EST:     CCATGTGAACAGATCACAATCTTCTAATGACACTTTTCCAACT                         GTCATGCACATTGCAGCTGCAACCGAGATTACTTCGAGGCTAAT
genomic: CCATGTGAACAGATCACAATCTTCTAATGACACTTTTCCAACTgtaagcttta ... ttttgtatagGTCATGCACATTGCAGCTGCAACCGAGATTACTTCGAGGCTAAT
EST: gi|116422670|gb|EG465262.1|EG465262
EST:     CAAATGACCATGTGAACAGATCACAATCTTCTAATGACACTTTTCCAACT                         GTCATGCACATTGCAGCTGCAACCGAGATTACTTCGAGGCTAATCCCTAGT
genomic: CAAATGACCATGTGAACAGATCACAATCTTCTAATGACACTTTTCCAACTgtaagcttta ... ttttgtatagGTCATGCACATTGCAGCTGCAACCGAGATTACTTCGAGGCTAATCCCTAGT
EST: gi|116467405|gb|EG509997.1|EG509997
EST:     CAAATGACCATGTGAACAGATCACAATCTTCTAATGACACTTTTCCAACT                         GTCATGCACATTGCAGCTGCAACCGAGATTACTTCGAGGCTAATCCCTAGT
genomic: CAAATGACCATGTGAACAGATCACAATCTTCTAATGACACTTTTCCAACTgtaagcttta ... ttttgtatagGTCATGCACATTGCAGCTGCAACCGAGATTACTTCGAGGCTAATCCCTAGT
EST: gi|116443356|gb|EG485948.1|EG485948
EST:     CAAATGACCATGTGAACAGATCACAATCTTCTAATGACACTTTTCCAACT                         GTCATGCACATTGCAGCTGCAACCGAGATTACTTCGAGGCTAATCCCTAGT
genomic: CAAATGACCATGTGAACAGATCACAATCTTCTAATGACACTTTTCCAACTgtaagcttta ... ttttgtatagGTCATGCACATTGCAGCTGCAACCGAGATTACTTCGAGGCTAATCCCTAGT
EST: gi|116456305|gb|EG498897.1|EG498897
EST:     CAAATGACCATGTGAACAGATCACAATCTTCTAATGACACTTTTCCAACT                         GTCATGCACACTGCAGCTGCAACCGAGATTACTTCGAGGCTAATCCCTAGT
genomic: CAAATGACCATGTGAACAGATCACAATCTTCTAATGACACTTTTCCAACTgtaagcttta ... ttttgtatagGTCATGCACATTGCAGCTGCAACCGAGATTACTTCGAGGCTAATCCCTAGT
EST: gi|116428316|gb|EG470908.1|EG470908
EST:     CAAATGACCATGTGAACAGATCACAATCTTCTAATGACACGTTTCCAACT                         GTCATGCACATTGCAGCTGCAACCGAGATTACTTCGAGGCTAATCCCTAGT
genomic: CAAATGACCATGTGAACAGATCACAATCTTCTAATGACACTTTTCCAACTgtaagcttta ... ttttgtatagGTCATGCACATTGCAGCTGCAACCGAGATTACTTCGAGGCTAATCCCTAGT
EST: gi|125059871|gb|EL128548.1|EL128548
EST:     GATCACAATCTTCTAATGACACTTTTCCAACT                         GTCATGCACATTGCAGCTGCAACCGAGA
genomic: GATCACAATCTTCTAATGACACTTTTCCAACTgtaagcttta ... ttttgtatagGTCATGCACATTGCAGCTGCAACCGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctcactgctctgtcaagtactacttgacggtcgtataattttggttttgtatagGTCATGCACATTGCAGCTGCAACCGAGATTACTTCGAGGCTAATCCCTAGTTTGAAAAATTTGCATAGCTCTTTGGAATCTAAG
                                  tataattttggtttt  TA-rich tract