1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagttgttgaaaatgggtttaatggttttagtaaaatgtagtgtttggtttgtgtaataaaaagatcagtgatggattgttttgtccgcagGTCAAGAGACTTGTGGAGATGGGTTTTGGAGACGCTCAAGTTAGGAGTGCAATTGAATCAAGTGGTGGTGATGAGAATCTGGCTCTGGAAAAGCTCTGTT
species | Arabidopsis thaliana |
transcript | AT5G50870.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTCGTTACTGGACTGAAACTTTCGCCAAGAAATCTTCTCTAGAGGAAAAA GTCAAGAGACTTGTGGAGATGGGTTTTGGAGACGCTCAAGTTAGGAGTGCAEST: gi|116484589|gb|EG527181.1|EG527181
genomic: CTCGTTACTGGACTGAAACTTTCGCCAAGAAATCTTCTCTAGAGGAAAAAgtaagttgtt ... ttgtccgcagGTCAAGAGACTTGTGGAGATGGGTTTTGGAGACGCTCAAGTTAGGAGTGCA
EST: CTCGTTACTGGACTGAAACTTTCGCCAAGAAATTTTCTTTAGAGGAAAAA GTCAAGAGACTTGTGGAGATGGGTTTTGGAGACGCTCAAGTTAGGAGTGCAEST: gi|116484588|gb|EG527180.1|EG527180
genomic: CTCGTTACTGGACTGAAACTTTCGCCAAGAAATCTTCTCTAGAGGAAAAAgtaagttgtt ... ttgtccgcagGTCAAGAGACTTGTGGAGATGGGTTTTGGAGACGCTCAAGTTAGGAGTGCA
EST: CTCGTTACTGGACTGAAACTTTCGCCAAGAAATCTTCTCTAGAGGAAAAA GTCAAGAGACTTGTGGAGATGGGTTTTGGAGACGCTCAAGTTAGGAGTGCAEST: gi|164216840|gb|ES214560.1|ES214560
genomic: CTCGTTACTGGACTGAAACTTTCGCCAAGAAATCTTCTCTAGAGGAAAAAgtaagttgtt ... ttgtccgcagGTCAAGAGACTTGTGGAGATGGGTTTTGGAGACGCTCAAGTTAGGAGTGCA
EST: GAAATCTTCTCTAGAGG-AAAA GTCAAGAGACTTGTGGAGATGGGTTTTGGAGACGCTCAAGTTAGGAGTGCAEST: gi|86081980|gb|DR377739.1|DR377739
genomic: GAAATCTTCTCTAGAGGAAAAAgtaagttgtt ... ttgtccgcagGTCAAGAGACTTGTGGAGATGGGTTTTGGAGACGCTCAAGTTAGGAGTGCA
EST: CTCGTTACTGGACTGAAACTTTCGCCAAGAAATCTTCTCTAGAGGAAAAA GTCAAGAGACTTGTGGAGATGGGTTTTGGAGACGCTCAAGTTAGGAGTGCA
genomic: CTCGTTACTGGACTGAAACTTTCGCCAAGAAATCTTCTCTAGAGGAAAAAgtaagttgtt ... ttgtccgcagGTCAAGAGACTTGTGGAGATGGGTTTTGGAGACGCTCAAGTTAGGAGTGCA
tgtagtgtttggtttgtgtaataaaaagatcagtgatggattgttttgtccgcagGTCAAGAGACTTGTGGAGATGGGTTTTGGAGACGCTCAAGTTAGGAGTGCAATTGAATCAAGTGGTGGTGATGAGAATCTGGCTCTGGAAAAGCTCTGTT
ttttgtcc CT-rich tract
tttgtgtaataaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgttgaaaatgggtttaatggttttagtaaaatgtagtgtttggtttgtgtaataaaaagatcagtgatggattgttttgtccgcagGTCAAGAGACTTGTGGAGATGGGTTTTGGAGACGCTCAAGTTAGGAGTGCAATTGAATCAAGTGGTGGTGATGAGAATCTGGCTCTGGAAAAGCTCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG