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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttaattgatcttgttcctttgtgagacttatttttctccaagtcactgaaaactatgcgttttcttttttcaagATTGGTTATGAATTTGACTTCAAAAGGGAGGCCAATGCAATGGAAAGAATTCGATGTTTTCTTTATGAGAACAACAAAAAGTCTCCTGTTTTGGTACCAA

Basic information

species Arabidopsis thaliana
transcript AT5G50330.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G50330.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA17G13650.1 (Glycine max), 3'ss of exon 5
-----------------gtactta-attgatcttg--ttcctttgtgagacttatttttctccaagtcactgaaaactatgcgttttctttt----ttcaagATTGGTTATGAATTTGACTTCAAAAGGGAGGCCAATGCAATGGAAAGAATTCGATGTTTTCTTTATGAGAACAACAAAAAGTCTCCTGTTTTGGTACCAA
                  || | |  || || |||   | |||  ||  | ||||  |    |||||     | | |||   | |   || |    ||  ||||||| |||||||||||||||| ||||||||| ||||| ||| |||| ||| ||   ||  | ||||| || ||||||||||||||||||||||| ||  
catgcttatatagcttcatagtcatgttaatattgaggttcttcctgcaatttatcatga--caagttctgaacatctacttgataatttgtgacattttagATTGGATATGAATTTGACTTCACAAGGGAGGCTAATGCGATGCAAAGGATTAGAAAGTTCTTGTATGAAAATAACAAAAAGTCTCCTGTTTTGGTGCCGC

upper sequence: AT5G50330.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA05G02990.1 (Glycine max), 3'ss of exon 5
-----------------gtactta-attgatcttg--ttcctttgtgagacttatttttctccaagtcactgaaaactatgcgttttctttt----ttcaagATTGGTTATGAATTTGACTTCAAAAGGGAGGCCAATGCAATGGAAAGAATTCGATGTTTTCTTTATGAGAACAACAAAAAGTCTCCTGTTTTGGTACCAA
                  || | |   | || |||   | |||  ||  | ||||  |    |||||     | | |||   | |   || |    ||  ||||||| ||||||||||||||||  |||||||| ||||| |||||||| ||| ||   ||  | ||||| |  ||||||||| ||||||||||||| ||  
catggttatatagcttcatagtcatgctaatattgaggttcttcctgcaatttatcatga--caagttctgaacatctacttgatgatttgtgacattttagATTGGATATGAATTTGACTTCACGAGGGAGGCTAATGCGATGGAAAGGATTAGAAAGTTCTTGTATGAAAGTAACAAAAAGACTCCTGTTTTGGTGCCGC

upper sequence: AT5G50330.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv17s0000g10260.t01 (Vitis vinifera), 3'ss of exon 5
--------------gtacttaattgatcttgttcctttgtgagacttatttttctc-caagtcactgaaaacta--------tgcgttttcttttttcaagATTGGTTATGAATTTGACTTCAAAAGGGAGGCCAATGCAATGGAAAGAATTCGATGTTTTCTTTATGAGAACAACAAAAAGTCTCCTGTTTTGGTACCAA
              ||| |   | ||| || |  ||   | |  |||  | || ||  |  |  ||  ||  ||        | | |||||||  ||||||||||| ||||||||||||||||  ||||||||  ||||||||||||||||   | ||||| | |||||||| |||||||||  |||||||||||| ||| 
attttcttgattaagta-tacgtagattttctatctgcattattcttgatcttttcatatatttcttgaacataattttattttctttttcttcattcaagATTGGATATGAATTTGACTTCATTAGGGAGGCTGATGCAATGGAAAGAATAAAACGTTTTTTGTATGAGAATAACAAAAAGCGTCCTGTTTTGGTGCCAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86072579|gb|DR368336.1|DR368336
EST:     CAGATATCAAATTTGACCTGCATTCCATAACAAAGGAAATGGAGAAACAG                         ATTGGTTATGAATTTGACT
genomic: CAGATATCAAATTTGACCTGCATTCCATAACAAAGGAAATGGAGAAACAGgtacttaatt ... ttttttcaagATTGGTTATGAATTTGACT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgagacttatttttctccaagtcactgaaaactatgcgttttcttttttcaagATTGGTTATGAATTTGACTTCAAAAGGGAGGCCAATGCAATGGAAAGAATTCGATGTTTTCTTTATGAGAACAACAAAAAGTCTCCTGTTTTGGTACCAA
                                    tgcgttttcttttttc  CT-rich tract
                                        ttttcttttttcaa  TA-rich tract