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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttttaccttttgttgttcgtggtagtatttaagtgtcaatagaaggtttgcttatatgattgtgttccagGAAGGAACCTGCATTGTACATCATCTATTCGGTCACGAGGTAGTGGAGAGAATAAAGTACATGTACTGTGACGCCTTTCTTACAGCACATCTTGAGGTTC

Basic information

species Arabidopsis thaliana
transcript AT5G50210.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G50210.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA05G02710.1 (Glycine max), 3'ss of exon 4
---------------------------gtaacttttaccttttgttgttcgtggtagtatttaagtgtcaatagaaggtttgcttatatgattgtgttccagGAAGGAACCTGCATTGTACATCATCTATTCGGTCACGAGGTAGTGGAGAGAATAAAGTACATGTACTGTGACGCCTTTCTTACAGCACATCTTGAGGTTC
                             || ||| ||  ||  ||||      ||    || | | |||   ||   | ||||| |  || |  || |||||| ||||| |||||||| || |||||||| || || ||||| |||||||  |||||  | ||||||||||| || || ||||| || ||||||||||| |
gtcttcctgtgttttgtattttttttaaaaagtttgactattccttgtataaaatatggcttgaatttcat--gattatatgcttttgcgacttggtgccagGATGGAACGTGCATTGTTCACCATCTATTTGGCCATGAGGTTGTGGAGAAGATAAAAGAAATGTACTGTGATGCATTCCTTACTGCCCATCTTGAGGTAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125019494|gb|EL091763.1|EL091763
EST:     ACAGCTTAGATTCCATTAAATCATTGCTTCCCCGTCTTCACTATTTCCAG                         GAAGGAACCTGCATTGTACATCAT
genomic: ACAGCTTAGATTCCATTAAATCATTGCTTCCCCGTCTTCACTATTTCCAGgtaactttta ... tgtgttccagGAAGGAACCTGCATTGTACATCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcgtggtagtatttaagtgtcaatagaaggtttgcttatatgattgtgttccagGAAGGAACCTGCATTGTACATCATCTATTCGGTCACGAGGTAGTGGAGAGAATAAAGTACATGTACTGTGACGCCTTTCTTACAGCACATCTTGAGGTTC
       tagtatttaa  TA-rich tract