Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcttagctgttgtaatgttgttcagaacagtcattgcatggattgtgatttcttcaacttcaagagtgtcgttcttgtgaatcttagGGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAGGAAGGGACGATATTTGCAGGATATCACTATGATCTTAATTTTCTAACGA

Basic information

species Arabidopsis thaliana
transcript AT5G48020.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116432363|gb|EG474955.1|EG474955
EST:     CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAG                         GGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAG
genomic: CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAGgtaagttctt ... tgaatcttagGGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAG
EST: gi|116432353|gb|EG474945.1|EG474945
EST:     CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAG                         GGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAG
genomic: CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAGgtaagttctt ... tgaatcttagGGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAG
EST: gi|116432357|gb|EG474949.1|EG474949
EST:     CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAG                         GGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAG
genomic: CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAGgtaagttctt ... tgaatcttagGGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAG
EST: gi|116433075|gb|EG475667.1|EG475667
EST:     CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAG                         GGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAG
genomic: CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAGgtaagttctt ... tgaatcttagGGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAG
EST: gi|116433062|gb|EG475654.1|EG475654
EST:     CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAG                         GGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAG
genomic: CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAGgtaagttctt ... tgaatcttagGGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAG
EST: gi|116432354|gb|EG474946.1|EG474946
EST:     CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAG                         GGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAG
genomic: CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAGgtaagttctt ... tgaatcttagGGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAG
EST: gi|164100024|gb|ES174372.1|ES174372
EST:     TTTGCCTAAGGATGCATTTACATCACTCATGAAGCAG                         GGTCCTCATCTTCTTGCTCCAACGGGAA
genomic: TTTGCCTAAGGATGCATTTACATCACTCATGAAGCAGgtaagttctt ... tgaatcttagGGTCCTCATCTTCTTGCTCCAACGGGAA
EST: gi|116433069|gb|EG475661.1|EG475661
EST:     CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAG                         GGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAG
genomic: CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAGgtaagttctt ... tgaatcttagGGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAG
EST: gi|125169307|gb|EL193417.1|EL193417
EST:     CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAG                         GGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTT
genomic: CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAGgtaagttctt ... tgaatcttagGGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTT
EST: gi|116432364|gb|EG474956.1|EG474956
EST:     CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAG                         GGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAG
genomic: CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAGgtaagttctt ... tgaatcttagGGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgcatggattgtgatttcttcaacttcaagagtgtcgttcttgtgaatcttagGGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAGGAAGGGACGATATTTGCAGGATATCACTATGATCTTAATTTTCTAACGA
                                       ttcttgt  CT-rich tract
               atttctt  TA-rich tract