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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatccttttttctacagtttcacttctgctgatatagagttatataaatgcagttctgaaaaactttgatgtttgattcttattgcatgaagaaatgatttttcttttgagtttctagtgatctttggtgttacctttttttgcggttttccttaaaagaatgaacagACATTGATGGAGCTTACTTTGGGACAACGTTTCCACATCTGTTCCTGATGACTTATGGGCATCTCAAGCCAGCGAAGGCAACACAAAACTATGTTCAAAG

Basic information

species Arabidopsis thaliana
transcript AT5G47080.1
intron # 4
splice site 3'
intron type U12 (go to U12 genes for details)


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctagtgatctttggtgttacctttttttgcggttttccttaaaagaatgaacagACATTGATGGAGCTTACTTTGGGACAACGTTTCCACATCTGTTCCTGATGACTTATGGGCATCTCAAGCCAGCGAAGGCAACACAAAACTATGTTCAAAG
 ttccttaaa  putative branch site 
                                       ttaaaagaat  TA-rich tract