1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaggtgatatcgaaaaaatattcttttacacatctcttatatgatgcaacttattttctcctttgcttgattgttgatgcaacttattttctcctttgcttgattgttgtagACAAGAACTTGTATTGTTAGACAACGAGATTGCATTCAACGAGGCTGTGATTGAAGAAAGAGAGCAAGGAATACAAGAAATCCATCAGCAAATTGGTGAG
species | Arabidopsis thaliana |
transcript | AT5G46860.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAGGTGGATAAGGTACCGGAACAGCGGGCACAACTTCAGGAGTCGAAAAG ACAAGAACTTGTATTGTTAGACAACGAGATTGCATTCAACGAGGCTGTGATEST: gi|124939463|gb|EL016001.1|EL016001
genomic: GAGGTGGATAAGGTACCGGAACAGCGGGCACAACTTCAGGAGTCGAAAAGgtaggtgata ... attgttgtagACAAGAACTTGTATTGTTAGACAACGAGATTGCATTCAACGAGGCTGTGAT
EST: AGGTGGATAAGGTACCGGAACAGCGGGCACAACTTCAGGAGTCGAAAAG ACAAGAACTTGTATTGTTAGACAACGAGATTGCATTCAACGAGGCTGTGATEST: gi|86038429|gb|DR334184.1|DR334184
genomic: AGGTGGATAAGGTACCGGAACAGCGGGCACAACTTCAGGAGTCGAAAAGgtaggtgata ... attgttgtagACAAGAACTTGTATTGTTAGACAACGAGATTGCATTCAACGAGGCTGTGAT
EST: GAGGTGGATAAGGTACCGGAACAGCGGGCACAACTTCAGGAGTCGAAAAG ACAANAACTTGTATTGTTAGACAACGAGATTGCATTCAACGAGGNTGTGATEST: gi|124786997|gb|EH876676.1|EH876676
genomic: GAGGTGGATAAGGTACCGGAACAGCGGGCACAACTTCAGGAGTCGAAAAGgtaggtgata ... attgttgtagACAAGAACTTGTATTGTTAGACAACGAGATTGCATTCAACGAGGCTGTGAT
EST: GAGGTGGATAAGGTACCGGAACAGCGGGCACAACTTCAGGAGTCGAAAAG ACAAGAACTTGTATTGTTAGACAACGAGATTGCAEST: gi|124855297|gb|EH939734.1|EH939734
genomic: GAGGTGGATAAGGTACCGGAACAGCGGGCACAACTTCAGGAGTCGAAAAGgtaggtgata ... attgttgtagACAAGAACTTGTATTGTTAGACAACGAGATTGCA
EST: CGGGCACAACTTCAGGAGTCGAAAAG ACAAGAACTTGTATTGTTAGACAACGAGATTGCATTCAACGAGGCTGTGATEST: gi|86038438|gb|DR334193.1|DR334193
genomic: CGGGCACAACTTCAGGAGTCGAAAAGgtaggtgata ... attgttgtagACAAGAACTTGTATTGTTAGACAACGAGATTGCATTCAACGAGGCTGTGAT
EST: GAGGTGGATAAGGTACCGGAACAGCGGGCACAACTTCAGGAGTCGAAAAG ACAAGAACTTGTATTGTTAGACAACGAGATTGCATTCAACGAGGCTGTGAT
genomic: GAGGTGGATAAGGTACCGGAACAGCGGGCACAACTTCAGGAGTCGAAAAGgtaggtgata ... attgttgtagACAAGAACTTGTATTGTTAGACAACGAGATTGCATTCAACGAGGCTGTGAT
ctcctttgcttgattgttgatgcaacttattttctcctttgcttgattgttgtagACAAGAACTTGTATTGTTAGACAACGAGATTGCATTCAACGAGGCTGTGATTGAAGAAAGAGAGCAAGGAATACAAGAAATCCATCAGCAAATTGGTGAG
aacttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtgatatcgaaaaaatattcttttacacatctcttatatgatgcaacttattttctcctttgcttgattgttgatgcaacttattttctcctttgcttgattgttgtagACAAGAACTTGTATTGTTAGACAACGAGATTGCATTCAACGAGGCTGTGATTGAAGAAAGAGAGCAAGGAATACAAGAAATCCATCAGCAAATTGGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA