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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaattcttgatcttgtgaatcgtagtcgaagacaaaccaattcattattgaagattaaagttctctggtttttcttttgcagGTAGAGTCATTCCTGAAAGTGTGATATTCAGTTATGGAACTATTCTTTTAGATCTTTTAAGCGGCAAACACATTCCACCTAGCCAT

Basic information

species Arabidopsis thaliana
transcript AT5G46570.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G46570.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G169080_T01 (Zea mays), 3'ss of exon 5
------------gtaaaattcttgatcttgtgaatcgtagtcgaagacaaaccaattcattattgaagattaaagt---tctctggtttttcttttgcagGTAGAGTCATTCCTGAAAGTGTGATATTCAGTTATGGAACTATTCTTTTAGATCTTTTAAGCGGCAAACACATTCCACCTAGCCAT
            ||  || | |  |       | ||  | |   |       ||||    ||||   || |  | |   |   | ||  ||   |  |||| ||||| ||||| || ||||||||||  || ||||||||| | || || |||||||| ||||| ||||||||||| ||||| |||
atctattgtttcgtttaagtttacaatacactattcacactattactgtttacaatatgctattttggactgcactgaataatttgtgcttgaatgacagGCAGAGTAATTCCCGAGAGTGTGATATATAGCTATGGAACTGTCCTGTTGGATCTTTTGAGCGGAAAACACATTCCTCCTAGTCAT

upper sequence: AT5G46570.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G054634_T02 (Zea mays), 3'ss of exon 5
------------gtaaaattcttgatcttgtgaatcgtagtcgaagacaaaccaattcattattgaagattaaagt---tctctggtttttcttttgcagGTAGAGTCATTCCTGAAAGTGTGATATTCAGTTATGGAACTATTCTTTTAGATCTTTTAAGCGGCAAACACATTCCACCTAGCCAT
            ||  || | |  |       | ||  |||   |       ||||    ||||   || |    |   |   | ||  ||   || |||| ||||| ||||| || |||||||| |  || ||||||||| | || || |||||||| ||||| ||||||||||| ||||| |||
gtctattgttttgttcaagtttacaatacactattcacagtaatactgtttacaatatgctattttggactgcgctgaataatttgtgcttgcattacagGCAGAGTAATTCCGGAGAGTGTGATCTATAGCTATGGAACTGTCCTGTTGGATCTTTTGAGCGGAAAACACATTCCTCCTAGTCAT

upper sequence: AT5G46570.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA17G16420.1 (Glycine max), 3'ss of exon 5
---------------gtaaaattcttgatcttgtga--atcgtagtcgaagacaaaccaattcattattgaagattaaagttctctggtttttcttttgcagGTAGAGTCATTCCTGAAAGTGTGATATTCAGTTATGGAACTATTCTTTTAGATCTTTTAAGCGGCAAACACATTCCACCTAGCCAT
               ||   |||  |  | |    |   || || | |||| |   | || | || ||| | ||  | |     ||       |   |||||| ||  | || || || |||||||| | ||||||||||||| ||||| | ||||||||||| ||||| |||||||| || ||||||
attgttttacctgatgttccattgattgtttcagaactgtcttattagaagtcttgctaact-ataattaatgacaatatgatacttaacaa-cacctgcagGCAGGATAATCCCAGAGAGTGTGATCTACAGTTATGGAACTGTTCTTCTGGATCTTTTAAGTGGCAAGCACATTCCTCCAAGCCAT

upper sequence: AT5G46570.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA05G06140.1 (Glycine max), 3'ss of exon 5
--------gtaaaattcttgatcttgtga--atcgtagtcgaagacaaaccaatt--cattattga--agattaaagttctctggttttt-cttttgcagGTAGAGTCATTCCTGAAAGTGTGATATTCAGTTATGGAACTATTCTTTTAGATCTTTTAAGCGGCAAACACATTCCACCTAGCCAT
         |   ||| ||  | |    |   || || | ||||     |||| |   |||| |||  | || | | ||  |   |     |   |||||| ||  | || || || |||||||| | ||||||||||||| ||||| | |||||| |||| ||||| || ||||| || ||||||
tacctgatattccattgtttgtttcagaactgtcttattagaagttttgccaactataattaatgataatatgatacttaacaaataacaacacctgcagGCAGGATAATCCCAGAGAGTGTGATCTACAGTTATGGAACTGTTCTTCTGGATCTTCTAAGTGGCAAGCATATTCCTCCAAGCCAT

upper sequence: AT5G46570.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv02s0012g01140.t01 (Vitis vinifera), 3'ss of exon 5
---------------gtaaaattcttgatct-tgtgaatcgtagtcgaagacaaaccaattcattattgaagattaaagttctctggtttttc--ttttgcagGTAGAGTCATTCCTGAAAGTGTGATATTCAGTTATGGAACTATTCTTTTAGATCTTTTAAGCGGCAAACACATTCCACCTAGCCAT
                ||  ||     || | | ||| | |  || ||      |   ||||  ||| |||    ||  |  || |||  |     | |||||| || |||||||| || |||||||||| ||||||||||||  |||| || || || || || || || || || || || || |||
gatcctgtcccattgatatgatatgaaatgtatttgatttgatgttgacatttga--gattccatat-gaaagcaaatttgatcaggtcatgaaactgtgcagGGAGGGTCATTCCAGAGAGTGTGATATACAGTTATGGAACAGTTCTATTGGACCTGTTGAGTGGGAAGCATATCCCTCCAAGTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagacaaaccaattcattattgaagattaaagttctctggtttttcttttgcagGTAGAGTCATTCCTGAAAGTGTGATATTCAGTTATGGAACTATTCTTTTAGATCTTTTAAGCGGCAAACACATTCCACCTAGCCAT
                                 ttctctggtttttctt  CT-rich tract
           aattcattattgaaga  TA-rich tract