1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aagtatgacttcaactaaccaaaaatatggctgattttctgttgctatggattctttctttgcatgctttttgttaatattgtcgaacaaatatttgcagGTACGAGTATAGATGGGCAGATGGTGTACAGATCAAGAAGCCCATCGAGGTTTCTGCTCCAAAGTATGTCGAGTACTTGATGGATTGGATCGAGACCCAA
species | Arabidopsis thaliana |
transcript | AT5G45550.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACCGAGTTCTGCACACCTGATAACTGTCCTACAATGACTGCTGGCCCAAA GTACGAGTATAGATGGGCAGATGGTGTACAGATCAAGAAGCCCATCGAGGTEST: gi|125091297|gb|EL149120.1|EL149120
genomic: ACCGAGTTCTGCACACCTGATAACTGTCCTACAATGACTGCTGGCCCAAAgtatagcctc ... atatttgcagGTACGAGTATAGATGGGCAGATGGTGTACAGATCAAGAAGCCCATCGAGGT
EST: ACCGAGTTCTGCACACCTGATAACTGTCCTACAATGACTGCTGGCCCAGA GTACGAGTATAGATGGGCAGATGGTGTAEST: gi|124805187|gb|EH892644.1|EH892644
genomic: ACCGAGTTCTGCACACCTGATAACTGTCCTACAATGACTGCTGGCCCAAAgtatagcctc ... atatttgcagGTACGAGTATAGATGGGCAGATGGTGTA
EST: CCGAGTTCTGCACACCTGATAACTGTCCTACAATGACTGCTGGCCCAAA GTACGAGTATAGATGGGCAGATGGTGTACAGATCAAGAAGCCCATEST: gi|116428996|gb|EG471588.1|EG471588
genomic: CCGAGTTCTGCACACCTGATAACTGTCCTACAATGACTGCTGGCCCAAAgtatagcctc ... atatttgcagGTACGAGTATAGATGGGCAGATGGTGTACAGATCAAGAAGCCCAT
EST: ACCGAGTTCTGCACACCTGATAACTGTCCTACAATGACTGCTGGCCCAAA GTACGAGTATAGATGGGCAGATGGTGTACAGATCAAGAAGCCCATCGAGGT
genomic: ACCGAGTTCTGCACACCTGATAACTGTCCTACAATGACTGCTGGCCCAAAgtatagcctc ... atatttgcagGTACGAGTATAGATGGGCAGATGGTGTACAGATCAAGAAGCCCATCGAGGT
tatggattctttctttgcatgctttttgttaatattgtcgaacaaatatttgcagGTACGAGTATAGATGGGCAGATGGTGTACAGATCAAGAAGCCCATCGAGGTTTCTGCTCCAAAGTATGTCGAGTACTTGATGGATTGGATCGAGACCCAA
tgttaat putative branch site (score: 3)
tttttgttaatattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtatgacttcaactaaccaaaaatatggctgattttctgttgctatggattctttctttgcatgctttttgttaatattgtcgaacaaatatttgcagGTACGAGTATAGATGGGCAGATGGTGTACAGATCAAGAAGCCCATCGAGGTTTCTGCTCCAAAGTATGTCGAGTACTTGATGGATTGGATCGAGACCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - -caactaa
- - - - - - - - - -caaaaat
- - - - - - - - - - - - - - - - - - - ctgttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgaacaa