1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagtatttttcattgagagataaagacgtgtataatgatttgtgtatggtttctagggtactgaagttttctatgtacagGTGGCAATTAAAAGAATGAAGAAGAAGTATTTCTCTTGGGAAGAGTGTGTGAATCTAAGAGAAGTGAAG
species | Arabidopsis thaliana |
transcript | AT5G45430.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAACATTTGGGAATGTTTGGCGAGCTGTCAATAAACAGACGAATGAAGTT GTGGCAATTAAAAGAATGAAGAAGAAGTATTTCTCTTGGGAAGAGTGTGTGEST: gi|116444408|gb|EG487000.1|EG487000
genomic: GAACATTTGGGAATGTTTGGCGAGCTGTCAATAAACAGACGAATGAAGTTgtaagtattt ... ctatgtacagGTGGCAATTAAAAGAATGAAGAAGAAGTATTTCTCTTGGGAAGAGTGTGTG
EST: GAACATTTGGGAATGTTTGGCGAGCTGTCAATAAACAGACGAATGAAGTT GTGGCAATTAAAAGAATGAAGAAGAAGTATTTCTCTTGGGAAGAGTGTGTGEST: gi|116444419|gb|EG487011.1|EG487011
genomic: GAACATTTGGGAATGTTTGGCGAGCTGTCAATAAACAGACGAATGAAGTTgtaagtattt ... ctatgtacagGTGGCAATTAAAAGAATGAAGAAGAAGTATTTCTCTTGGGAAGAGTGTGTG
EST: GAACATTTGGGAATGTTTGGCGAGCTGTCAATAAACAGACGAATGAAGTT GTGGCAATTAAAAGAATGAAGAAGAAGTATTTCTCTTGGGAAGAGTGTGTG
genomic: GAACATTTGGGAATGTTTGGCGAGCTGTCAATAAACAGACGAATGAAGTTgtaagtattt ... ctatgtacagGTGGCAATTAAAAGAATGAAGAAGAAGTATTTCTCTTGGGAAGAGTGTGTG
acgtgtataatgatttgtgtatggtttctagggtactgaagttttctatgtacagGTGGCAATTAAAAGAATGAAGAAGAAGTATTTCTCTTGGGAAGAGTGTGTGAATCTAAGAGAAGTGAAG
ttttctat CT-rich tract
tataatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatttttcattgagagataaagacgtgtataatgatttgtgtatggtttctagggtactgaagttttctatgtacagGTGGCAATTAAAAGAATGAAGAAGAAGTATTTCTCTTGGGAAGAGTGTGTGAATCTAAGAGAAGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT