Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgcatactaaattctcagatctttcttttgccaattgtgatgctcaaaagtctcgagacctaatggttaaacatgttttttcctggaacctcagATGTTACATATGCCTTGTGGAATATGAAGAAGCAGACTCTATAAGGACACTTCCTTGTCATCATGAATTCCACAAAACCTGTGTAGATAAATGGCTCAAG

Basic information

species Arabidopsis thaliana
transcript AT5G45290.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124864012|gb|EH948449.1|EH948449
EST:     TTATTACCGATAAAACTTTATACTAAGTCACAAAGCGAGGATCCATCACA                         ATGTTACATAT
genomic: TTATTACCGATAAAACTTTATACTAAGTCACAAAGCGAGGATCCATCACAgtaatgcata ... ggaacctcagATGTTACATAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgctcaaaagtctcgagacctaatggttaaacatgttttttcctggaacctcagATGTTACATATGCCTTGTGGAATATGAAGAAGCAGACTCTATAAGGACACTTCCTTGTCATCATGAATTCCACAAAACCTGTGTAGATAAATGGCTCAAG
                  acctaat  putative branch site (score: 3)
                                    ttttttcctg  putative PPT
                           ttaaacatgtttttt  TA-rich tract