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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtagacttcatgtatatgatttatgttacaatttagtttccaggttggtggtggtagctttacttgagtacttccaaatgtgctaaaagttaactcatacatgcagACTGCTGCTTTAGATGGTGAAACTGATCTCAAAACAAGAGTGATACCCTCAGCATGTGTGGGAATTGATTTAGAATTGTTACACAAAATGAAA

Basic information

species Arabidopsis thaliana
transcript AT5G44240.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G44240.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: LOC_Os04g28460.1 (Oryza sativa), 3'ss of exon 3
-gtaggtagacttcatgtatatgatttatgttacaatttagtttccaggttggtggtggtagctttacttgagtacttccaaatgtgctaaaagttaactcatacatgcagACTGCTGCTTTAGATGGTGAAACTGATCTCAAAACAAGAGTGATACCCTCAGCATGTGTGGGAATTGATTTAGAATTGTTACACAAAATGAAA
 |    |    || |  || ||| | |  |  | |  | | ||||    ||||  |  |||  |  |  | | | |     | ||| | || | || ||||       ||||| |||||||||||||||||||||||  | ||||||||| |  | || ||    ||||      ||  |  |||    |||  || | | || 
agatccttagttttaccta-atgctatcagaaatatataattttct---ttggctgccgtaaatcaagctaattccaaattattgttccaatattttactc-------cagACAGCTGCTTTAGATGGTGAAACTGACTTGAAAACAAGAATTGTTCCTTCTATCTGTGCTAACCTTTCTCCAGATCAATTAGGCAGAGTCAAG

upper sequence: AT5G44240.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G347447_T02 (Zea mays), 3'ss of exon 4
gtaggtagacttcatgtatatgatttatgttacaatttagtttccaggttggtggtggtagctttacttgagtacttccaaatgtgctaaaagttaactcatacatgcagACTGCTGCTTTAGATGGTGAAACTGATCTCAAAACAAGAGTGATACCCTCAGCATGTGTGGGAATTGATTTAGAATTGTTACACAAAATGAAA
  |  |   || | ||| |  ||   | |  |  |   |   | |   |   |||  || |   || ||||      | || |||| |     ||    | |     |||||||||||||| ||||||||||||||  | |||||||||   || ||  ||   | ||      |     ||||   | ||   ||| | || 
--aattctcctgcgtgtttgagaaaaacgaaatgaaggaaacttcttatcaatggctgttgacgtagttga---tgcctaactgtgtttcccattgttgctt-----cagACTGCTGCTTTGGATGGTGAAACTGACTTGAAAACAAGAACCATTCCTCCAATTTCTGCTAACTTGTCAGTAGAGCAGCTAGGAAAAGTCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtagctttacttgagtacttccaaatgtgctaaaagttaactcatacatgcagACTGCTGCTTTAGATGGTGAAACTGATCTCAAAACAAGAGTGATACCCTCAGCATGTGTGGGAATTGATTTAGAATTGTTACACAAAATGAAA
                                taaaagttaa  TA-rich tract