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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgataaatcctctgggttgttttagttttctctttatcatgcttgacctaaactcactgtccttaattccatgaagtagCCCAAATGCGGATTTCTTCCAACCTCAAGGTTCATAGGTAAAGAAAACATGCTCAAAACAAGCGTAAGCCGTTTCAAAATGCATCAACTCTTAAAGTTGG

Basic information

species Arabidopsis thaliana
transcript AT5G42810.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G42810.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA14G07880.1 (Glycine max), 3'ss of exon 5
----------------------------------------------------------------------------------gtttgataaatcctctgggttgttttagttttctctttatcatgcttgacctaaac--tcactgtc-cttaattccatgaagtagCCCAAATGCGGATTTCTTCCAACCTCAAGGTTCATAGGTAAAGAAAACATGCTCAAAACAAGCGTAAGCCGTTTCAAAATGCATCAACTCTTAAAGTTGG
                                                                                   |||     | | ||     | |  |     ||| | | |   |||||     |||  | ||| |   || |       ||||||||||||||||||||||||||    ||||| ||||||  | ||| |||     ||||||  ||  ||| ||| ||  ||||||| |||    | || ||| 
gtattgcctgcattatgtcacacactgttattttttggtttattttctctccttaaagaatacttcagtttaaattgaatatctttatctcagcttcacccctttcctctcagtctttctctttcgcttggttgtaacaataacttttattttaccttgaaaagtagCCCAAATGCGGATTTCTTCCTCTTTCAAGATTCATATCTGAAGTAAATGCTATCAAAAGGAGAATAACCCGATTTGAAATGCACCAAACTCTGAAATTGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttctctttatcatgcttgacctaaactcactgtccttaattccatgaagtagCCCAAATGCGGATTTCTTCCAACCTCAAGGTTCATAGGTAAAGAAAACATGCTCAAAACAAGCGTAAGCCGTTTCAAAATGCATCAACTCTTAAAGTTGG
        tttatcat  TA-rich tract