1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgactctcatttttcagaaacatcggttctccaatgttcgtttatgttccaaaagtatagcaagagcatctacattttcagctaggattttgctcaatgcacaagctttgcttcttgaatgtttgtgtatgtagtaagatcatcatctctagtttttagctgttttaatggaaatgtttatgcaattggtagGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCTTTGGTACCAGAGATTGCACACATGTACAAAACCGACAGAGCCAAATACG
species | Arabidopsis thaliana |
transcript | AT5G41700.5 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAG GTGTTGCTCTCGATATGTTCGCTGTEST: gi|125192233|gb|EL207187.1|EL207187
genomic: GCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAGgtgactctca ... caattggtagGTGTTGCTCTCGATATGTTCGCTGT
EST: GCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAG GTGTTGCTCTCGATATGTTCGCTGTTAACAGATEST: gi|125196991|gb|EL211945.1|EL211945
genomic: GCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAGgtgactctca ... caattggtagGTGTTGCTCTCGATATGTTCGCTGTTAACAGAT
EST: GCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAG GTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAEST: gi|164145518|gb|ES051442.1|ES051442
genomic: GCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAGgtgactctca ... caattggtagGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAA
EST: GCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAG GTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGEST: gi|124867520|gb|EH951957.1|EH951957
genomic: GCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAGgtgactctca ... caattggtagGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAG
EST: GCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAG GTGTTGCTCTCGATATGTTCGEST: gi|116411812|gb|EG454404.1|EG454404
genomic: GCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAGgtgactctca ... caattggtagGTGTTGCTCTCGATATGTTCG
EST: G-CTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAG GTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCTEST: gi|124887695|gb|EH966597.1|EH966597
genomic: GCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAGgtgactctca ... caattggtagGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCT
EST: CCCTCACCATTTCCAAG GTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCTEST: gi|163989623|gb|EL982844.1|EL982844
genomic: CCCTCACCATTTCCAAGgtgactctca ... caattggtagGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCT
EST: GCCCTGCCCTCACCATTTCCAAG GTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCTEST: gi|125018305|gb|EL090574.1|EL090574
genomic: GCCCTGCCCTCACCATTTCCAAGgtgactctca ... caattggtagGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCT
EST: GAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAG GTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCTEST: gi|125254385|gb|EL268470.1|EL268470
genomic: GAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAGgtgactctca ... caattggtagGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCT
EST: TTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAG GTGTTGCTCTCGATATGTTCACTGTTAACAGATCCAAATCCAGATGACCCTEST: gi|164031964|gb|ES035435.1|ES035435
genomic: TTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAGgtgactctca ... caattggtagGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCT
EST: GCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAG GTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCEST: gi|125316903|gb|EL330988.1|EL330988
genomic: GCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAGgtgactctca ... caattggtagGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCC
EST: CCCTCACCATTTCCAAG GTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCTEST: gi|125321815|gb|EL335900.1|EL335900
genomic: CCCTCACCATTTCCAAGgtgactctca ... caattggtagGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCT
EST: GCCTTGACATTTTGAAATAACAATGGAGCCCTGCCCTCACCATTTCCAAG GTGTTGCTCTCGATATGTTCGCTGTTAACAGATACCAAAEST: gi|124752658|gb|EH842788.1|EH842788
genomic: GCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAGgtgactctca ... caattggtagGTGTTGCTCTCGATATGTTCGCTGTTAACAGAT-CCAAA
EST: GCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAG GTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAEST: gi|124956862|gb|EL031744.1|EL031744
genomic: GCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAGgtgactctca ... caattggtagGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCA
EST: CCTTGACATTTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAG GTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGEST: gi|124935541|gb|EL012517.1|EL012517
genomic: CCTTGACA-TTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAGgtgactctca ... caattggtagGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAG
EST: GCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAG GTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGEST: gi|116411821|gb|EG454413.1|EG454413
genomic: GCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAGgtgactctca ... caattggtagGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATG
EST: G-CTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAG GTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCTEST: gi|124948779|gb|EL024490.1|EL024490
genomic: GCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAGgtgactctca ... caattggtagGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCT
EST: GCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAG GTGTTGCTCTCGATAEST: gi|124750881|gb|EH841011.1|EH841011
genomic: GCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAGgtgactctca ... caattggtagGTGTTGCTCTCGATA
EST: CCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAG GTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCTEST: gi|125005673|gb|EL077942.1|EL077942
genomic: CCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAGgtgactctca ... caattggtagGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCT
EST: GCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAG GTGTTGCTCTCGATEST: gi|125247172|gb|EL261257.1|EL261257
genomic: GCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAGgtgactctca ... caattggtagGTGTTGCTCTCGAT
EST: TCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAG GTGTTGCTCTCGATATGTTCGEST: gi|125124125|gb|EL170260.1|EL170260
genomic: -CCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAGgtgactctca ... caattggtagGTGTTGCTCTCGATATGTTCG
EST: CTCACCATTTCCAAG GTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCTEST: gi|124947031|gb|EL022901.1|EL022901
genomic: CTCACCATTTCCAAGgtgactctca ... caattggtagGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCT
EST: GCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAG GTGTTGCTCTCGATATGTTCGCTGTTAACAGAEST: gi|125273580|gb|EL287665.1|EL287665
genomic: GCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAGgtgactctca ... caattggtagGTGTTGCTCTCGATATGTTCGCTGTTAACAGA
EST: CCCTGCCCTCACCATTTCCAAG GTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCTEST: gi|164205235|gb|ES192640.1|ES192640
genomic: CCCTGCCCTCACCATTTCCAAGgtgactctca ... caattggtagGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCT
EST: GCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAG GTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGAEST: gi|116419398|gb|EG461990.1|EG461990
genomic: GCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAGgtgactctca ... caattggtagGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGA
EST: TGGAGCCCTGCCCTCACCATTTCCAGG GTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCTEST: gi|124848246|gb|EH932683.1|EH932683
genomic: TGGAGCCCTGCCCTCACCATTTCCAAGgtgactctca ... caattggtagGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCT
EST: CAATGGAGCCCTGCCCTCACCATTTCCAAG GTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAAGATGACCC
genomic: CAATGGAGCCCTGCCCTCACCATTTCCAAGgtgactctca ... caattggtagGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCA-GATGACCC
gatcatcatctctagtttttagctgttttaatggaaatgtttatgcaattggtagGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCTTTGGTACCAGAGATTGCACACATGTACAAAACCGACAGAGCCAAATACG
ttttaat putative branch site (score: 3)
aaatgtttat TA-rich tract