1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaatgtttgtttgttatcatgctgtacattcatcattctactccagtttacgcatatgattgtggcctcttgtgatctcgtgctgctgaaactttattttatcgaagtttgcgattatgattgcagGGATAACTGCGGCGTCGGGGATAGCAGCAGAGTTGGGGATTCCACTAACACATCGAGGTGTTGCAACTAGTGTAAGGTTTCTCACTGGTCATTCAAGGAA
species | Arabidopsis thaliana |
transcript | AT5G40850.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAAATTGGACTTTCTGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAG GGATAACTGCGGCGTCGGGGATAGCAGCAGEST: gi|125217750|gb|EL231833.1|EL231833
genomic: GAAA-TGGACTTTCTGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAGgtaatgtttg ... atgattgcagGGATAACTGCGGCGTCGGGGATAGCAGCAG
EST: GACTTTCTGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAG GGATAACTGCGGCGTCGGGGATAGCAGCAGAGTTGGGGATTCCACTAACAEST: gi|164133698|gb|ES189966.1|ES189966
genomic: GACTTTCTGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAGgtaatgtttg ... atgattgcagGGATAACTGCGGCGTCGGGGATAGCAGCAGAGTTGGGGATTCCACTAACA
EST: AATGGACTTTCTGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAG GGATAACTGCGGCGTCGGGGATAGCAGCAGAGTTGGGGATTCCACTAACACEST: gi|124772827|gb|EH862956.1|EH862956
genomic: AATGGACTTTCTGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAGgtaatgtttg ... atgattgcagGGATAACTGCGGCGTCGGGGATAGCAGCAGAGTTGGGGATTCCACTAACAC
EST: GAAATGGACTTTCTGCAACAGCAAGGGATTTCGAGTTCAAGTTATACCAG GGATAACTGCGGCGTCGGGGATAGCAGCAGAGTTGGGGATTCCACTAACAEST: gi|125307007|gb|EL321092.1|EL321092
genomic: GAAATGGACTTTCTGCAACAGCAAGGGA-TTCGAGTTCAAGTTATACCAGgtaatgtttg ... atgattgcagGGATAACTGCGGCGTCGGGGATAGCAGCAGAGTTGGGGATTCCACTAACA
EST: AGAAATGGACTTTCTGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAG GGATAACTGCGGCGTCGGGGEST: gi|124731413|gb|EH822815.1|EH822815
genomic: AGAAATGGACTTTCTGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAGgtaatgtttg ... atgattgcagGGATAACTGCGGCGTCGGGG
EST: TGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAG GGATAACTGCGGCGTCGGGGATAGCAGCAGAGTTGGGGATTCCACTAACACEST: gi|125316863|gb|EL330948.1|EL330948
genomic: TGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAGgtaatgtttg ... atgattgcagGGATAACTGCGGCGTCGGGGATAGCAGCAGAGTTGGGGATTCCACTAACAC
EST: AAATGGACTTTCTGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAG GGATAACTGCGGCGTCGGGGATAGCAGCAGAGTTGGGGATTCCACTAACACEST: gi|116459489|gb|EG502081.1|EG502081
genomic: AAATGGACTTTCTGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAGgtaatgtttg ... atgattgcagGGATAACTGCGGCGTCGGGGATAGCAGCAGAGTTGGGGATTCCACTAACAC
EST: AGAAATGGACTTTCTGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAG GGATAACTGCGGCGTCGGGGATAEST: gi|125004154|gb|EL076423.1|EL076423
genomic: AGAAATGGACTTTCTGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAGgtaatgtttg ... atgattgcagGGATAACTGCGGCGTCGGGGATA
EST: GAAATGGACTTTCTTGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAG GGATAACTGCGGCGTCGGGGATAGCAGCAGAGTTGGGEST: gi|125068746|gb|EL134766.1|EL134766
genomic: GAAATGGACTTTC-TGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAGgtaatgtttg ... atgattgcagGGATAACTGCGGCGTCGGGGATAGCAGCAGAGTTGGG
EST: CTTTCTGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAG GGATAACTGCGGCGTCGGGGATAGCAGCAGAGTTGGGGATTCCACTAACACEST: gi|125050163|gb|EL122432.1|EL122432
genomic: CTTTCTGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAGgtaatgtttg ... atgattgcagGGATAACTGCGGCGTCGGGGATAGCAGCAGAGTTGGGGATTCCACTAACAC
EST: GAAATGGGCTTTCTGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAG GGATAACTGCGGCGTCGGGGATAGCAGCAGAGTTGGGGATTCCACTAACACEST: gi|116459485|gb|EG502077.1|EG502077
genomic: GAAATGGACTTTCTGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAGgtaatgtttg ... atgattgcagGGATAACTGCGGCGTCGGGGATAGCAGCAGAGTTGGGGATTCCACTAACAC
EST: AGAAATGGACTTTCTGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAG GGATAACTGCGGCGTCGGGGATAEST: gi|86080219|gb|DR375976.1|DR375976
genomic: AGAAATGGACTTTCTGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAGgtaatgtttg ... atgattgcagGGATAACTGCGGCGTCGGGGATA
EST: AGAAATGGACTTTCTGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAG GGATAACTGCGGCGTCGGGGATAGCAGCAGAGTTGGGGATTCCACTAACACEST: gi|124908510|gb|EH982590.1|EH982590
genomic: AGAAATGGACTTTCTGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAGgtaatgtttg ... atgattgcagGGATAACTGCGGCGTCGGGGATAGCAGCAGAGTTGGGGATTCCACTAACAC
EST: AGAAATGGACTTTCTGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAG GGATAACTGCGGCGTCGGGGATAGEST: gi|124887357|gb|EH966259.1|EH966259
genomic: AGAAATGGACTTTCTGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAGgtaatgtttg ... atgattgcagGGATAACTGCGGCGTCGGGGATAG
EST: AGAAATGGACTTTCTGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAG GGATAACTGCGGCGTCGGGGATAGCAGCAGEST: gi|124915745|gb|EH989619.1|EH989619
genomic: AGAAATGGACTTTCTGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAGgtaatgtttg ... atgattgcagGGATAACTGCGGCGTCGGGGATAGCAGCAG
EST: AGAAATGGACTTTCTGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAG GGATAACTGCGGCGTCGGGGATAGCAGCAGAGTTGGGGATTCCACTAA
genomic: AGAAATGGACTTTCTGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAGgtaatgtttg ... atgattgcagGGATAACTGCGGCGTCGGGGATAGCAGCAGAGTTGGGGATTCCACTAA
gtgatctcgtgctgctgaaactttattttatcgaagtttgcgattatgattgcagGGATAACTGCGGCGTCGGGGATAGCAGCAGAGTTGGGGATTCCACTAACACATCGAGGTGTTGCAACTAGTGTAAGGTTTCTCACTGGTCATTCAAGGAA
tgaaactttattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgtttgtttgttatcatgctgtacattcatcattctactccagtttacgcatatgattgtggcctcttgtgatctcgtgctgctgaaactttattttatcgaagtttgcgattatgattgcagGGATAACTGCGGCGTCGGGGATAGCAGCAGAGTTGGGGATTCCACTAACACATCGAGGTGTTGCAACTAGTGTAAGGTTTCTCACTGGTCATTCAAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA