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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtttttctaaacaagaacgtacccttaaatactcgagagagaaccgttattaactaggtctaaaccaaatcttggttttgttgcagATATATGCAATGCCGGTATTTGATATGATGGAGACTTTATTGGTCAAGAAGCTAAATTTCAGACCAACCACAACTCTTCGGTTCTTTGTCCGTAATTTCT

Basic information

species Arabidopsis thaliana
transcript AT5G40780.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125036283|gb|EL108552.1|EL108552
EST:     TCGCCACGGCGAACATCTTCGTCGTGATCCATGTCATTGGTAGTTACCAG                         ATATATGCAATGCCGGT
genomic: TCGCCACGGCGAACATCTTCGTCGTGATCCATGTCATTGGTAGTTACCAGgttggttttt ... tttgttgcagATATATGCAATGCCGGT
EST: gi|125207856|gb|EL222810.1|EL222810
EST:     ATCTTCGTCGTGATCCATGTCATTGGTAGTTACCAG                         ATATATGCAATGCCGGTATTTGATATGATGGAGACTTTATTGGTCAAGAAG
genomic: ATCTTCGTCGTGATCCATGTCATTGGTAGTTACCAGgttggttttt ... tttgttgcagATATATGCAATGCCGGTATTTGATATGATGGAGACTTTATTGGTCAAGAAG
EST: gi|86086870|gb|DR382629.1|DR382629
EST:     TTCGTCGTGATCCATGTCATTGGTAGTTACCAG                         ATATATGCAATGCCGGTATTTGATATGATGGAGACTTTATTGGTCAAGAAG
genomic: TTCGTCGTGATCCATGTCATTGGTAGTTACCAGgttggttttt ... tttgttgcagATATATGCAATGCCGGTATTTGATATGATGGAGACTTTATTGGTCAAGAAG
EST: gi|124878905|gb|EH958342.1|EH958342
EST:     CGCCACGGCGAACATCTTCGTCGTGATCCATGTCATTGGTAGTTAACCAG                         ATATATGCAATGCCGGTATT
genomic: CGCCACGGCGAACATCTTCGTCGTGATCCATGTCATTGGTAGTTA-CCAGgttggttttt ... tttgttgcagATATATGCAATGCCGGTATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcgagagagaaccgttattaactaggtctaaaccaaatcttggttttgttgcagATATATGCAATGCCGGTATTTGATATGATGGAGACTTTATTGGTCAAGAAGCTAAATTTCAGACCAACCACAACTCTTCGGTTCTTTGTCCGTAATTTCT
                                            ttttgtt  CT-rich tract
               ttattaacta  TA-rich tract