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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatatttttttagttttgattcggtcaatatcatatgacaagtttggactctaatactcaaagaaaccttgtagcttctgagaattgcaaagaacatttcactgaaagatttgaacacttctgaacatattgtcttcgttctgtttcttgtgttcccgtgcttatctgctctggtgtggttgcattgcagAGTTTGGCTAATAGTTGTTTTCCGGTAAATAAAGGTTCATCAGCCAACCGTCTTCACG

Basic information

species Arabidopsis thaliana
transcript AT5G40710.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164213201|gb|ES079986.1|ES079986
EST:     GCTGCTGCAAAAAACCGGCACTTATGTGAG                         AGTTTGGCTAATAGTTGTTTTCCGGTAAATAAAGGTCCATCAGCCAACCGT
genomic: GCTGCTGCAAAAAACCGGCACTTATGTGAGgtacatattt ... tgcattgcagAGTTTGGCTAATAGTTGTTTTCCGGTAAATAAAGGTTCATCAGCCAACCGT
EST: gi|124785868|gb|EH875547.1|EH875547
EST:     AGTCCAAGTGTAATCCTGCAGCTGCTGCAAAAAACCGGCACTTATGTGAG                         AGTTTGGCTAGTAGTTGTTTTCCGGTAAATAAAGGTTCAT
genomic: AGTCCAAGTGTAATCCTGCAGCTGCTGCAAAAAACCGGCACTTATGTGAGgtacatattt ... tgcattgcagAGTTTGGCTAATAGTTGTTTTCCGGTAAATAAAGGTTCAT