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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacatcatatgagctttattctagtcattaaacggtctttctttcacaacgctgacctcttaagcaagttttttgtcacagGTTGCGGATTTTGGACTTGCAAAAATTGCACAAGAACTGGATTTAAACACACACGTCTCAACGCGCGTAATGGGAACCTTTGG

Basic information

species Arabidopsis thaliana
transcript AT5G38560.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116453654|gb|EG496246.1|EG496246
EST:     GTGACATAAAATCTTCCAACATACTTCTTGATAACAGCTTTGAAGCCTTG                         GTTGCGGATTTTGGACTTGCAAAAATTGCACAAGAACTGGATTTAAACACA
genomic: GTGACATAAAATCTTCCAACATACTTCTTGATAACAGCTTTGAAGCCTTGgtaacatcat ... tttgtcacagGTTGCGGATTTTGGACTTGCAAAAATTGCACAAGAACTGGATTTAAACACA
EST: gi|116453662|gb|EG496254.1|EG496254
EST:     GTGACATAAAATCTTCCAACATACTTCTTGATAACAGCTTTGAAGCCTTG                         GTTGCGGATTTTGGACTTGCAAAAATTGCACAAGAACTGGATTTAAACACA
genomic: GTGACATAAAATCTTCCAACATACTTCTTGATAACAGCTTTGAAGCCTTGgtaacatcat ... tttgtcacagGTTGCGGATTTTGGACTTGCAAAAATTGCACAAGAACTGGATTTAAACACA
EST: gi|116453644|gb|EG496236.1|EG496236
EST:     GTGACATAAAATCTTCCAACATACTTCTTGATAACAGCTTTGAAGCCTTG                         GTTGCGGATTTTGGACTTGCAAAAATTGCACAAAAACTGGATTTAAACACA
genomic: GTGACATAAAATCTTCCAACATACTTCTTGATAACAGCTTTGAAGCCTTGgtaacatcat ... tttgtcacagGTTGCGGATTTTGGACTTGCAAAAATTGCACAAGAACTGGATTTAAACACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaaacggtctttctttcacaacgctgacctcttaagcaagttttttgtcacagGTTGCGGATTTTGGACTTGCAAAAATTGCACAAGAACTGGATTTAAACACACACGTCTCAACGCGCGTAATGGGAACCTTTGG
                       cgctgac  putative branch site (score: 3)
                                          ttttttgtc  putative PPT
                                       aagtttttt  TA-rich tract