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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtccttattcactttttccctgactttgaaacgatttattcgagagctctaacgcattgacgaatatacgaaacgcagGGAAAATCTGAAGAACATCTTGACAAATGTTTACGGGAACAAGGACAATGTAGATGACACCCTTGTAGAG

Basic information

species Arabidopsis thaliana
transcript AT5G38520.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125281122|gb|EL295207.1|EL295207
EST:     CTCAAGCAAAGAGGAATTGCTTCTGCACTCTTCAACCGTGTTAAAGACAG                         GGAAAATCTGAAGAACATCTTGACAAAT
genomic: CTCAAGCAAAGAGGAATTGCTTCTGCACTCTTCAACCGTGTTAAAGACAGgtatgtcctt ... cgaaacgcagGGAAAATCTGAAGAACATCTTGACAAAT
EST: gi|125181764|gb|EL197732.1|EL197732
EST:     CTCAAGCAAAGAGGAATTGC-TCTGCACTCTTCAACCGTGTTAAAGACAG                         GGAAAATCTGAAGAACATCTTGACAAATGTTTACG
genomic: CTCAAGCAAAGAGGAATTGCTTCTGCACTCTTCAACCGTGTTAAAGACAGgtatgtcctt ... cgaaacgcagGGAAAATCTGAAGAACATCTTGACAAATGTTTACG
EST: gi|86074209|gb|DR369966.1|DR369966
EST:     CTCAAGCAAAGAGGAATTGCTTCTGCACTCTTCAACCGTGTTAAAGACAG                         GGAAAATCTGAAGAACATCTTGACAAATGTTTACGGGAACAAGGACAATGT
genomic: CTCAAGCAAAGAGGAATTGCTTCTGCACTCTTCAACCGTGTTAAAGACAGgtatgtcctt ... cgaaacgcagGGAAAATCTGAAGAACATCTTGACAAATGTTTACGGGAACAAGGACAATGT
EST: gi|125254029|gb|EL268114.1|EL268114
EST:     CTCAAGCAAAGAGGAATTGCTTCTGCACTCTTCAACCGTGTTAAAGACAG                         GGAAAATCTGAAGAACATCTTGACAAATGTTTACGGGAACAAGG
genomic: CTCAAGCAAAGAGGAATTGCTTCTGCACTCTTCAACCGTGTTAAAGACAGgtatgtcctt ... cgaaacgcagGGAAAATCTGAAGAACATCTTGACAAATGTTTACGGGAACAAGG
EST: gi|124987202|gb|EL059673.1|EL059673
EST:     AGGAATTGCTTCTGCACTCTTCAACCGTGTTAAAGACAG                         GGAAAATCTGAAGAACATCTTGACAAATGTTTACGGGAACAAGGACAATGT
genomic: AGGAATTGCTTCTGCACTCTTCAACCGTGTTAAAGACAGgtatgtcctt ... cgaaacgcagGGAAAATCTGAAGAACATCTTGACAAATGTTTACGGGAACAAGGACAATGT
EST: gi|124885703|gb|EH964605.1|EH964605
EST:     CTCAAGCAAAGAGGAATTGCTTCTGCACTCTTCAACCGTGTTAAAGACAG                         GGAAAATCTGAAGAACATCTTGACAAATGTTTACGGGAAC
genomic: CTCAAGCAAAGAGGAATTGCTTCTGCACTCTTCAACCGTGTTAAAGACAGgtatgtcctt ... cgaaacgcagGGAAAATCTGAAGAACATCTTGACAAATGTTTACGGGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgaaacgatttattcgagagctctaacgcattgacgaatatacgaaacgcagGGAAAATCTGAAGAACATCTTGACAAATGTTTACGGGAACAAGGACAATGTAGATGACACCCTTGTAGAG
          atttatt  TA-rich tract