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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagaactgtaaaccagtatttgttgtcttctggacttcctgaaaaattgaaaagtttgccgattgaagggcttattgtatttgtatgtcaacttttctagATGGCCTGGGAACTGAAGTCAATGAAGAAGGCATTGCTTTCTACAACGATCTTATTAATACACTTCTTGAAAAAG

Basic information

species Arabidopsis thaliana
transcript AT5G36890.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G36890.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv00s0220g00070.t01 (Vitis vinifera), 3'ss of exon 3
aagaactgtaaaccagtatttgttgtcttctggacttcctgaaaaattgaaaagtttgccgattgaagggcttattgtatttgtatgtcaacttttctagATGGCCTGGGAACTGAAGTCAATGAAGAAGGCATTGCTTTCTACAACGATCTTATTAATACACTTCTTGAAAAAG
 |  |    || | |   |   || |   |     ||  |              |     |||  | || || | |   || |  |    |   ||  ||||||  | |||||  |||||||||| ||||||||||||| ||||||| |||| |||||| | |||||||| || |
taatatcaaaatcaaaagtgcatttttgcccatgtttttttgtcttagctttgttgcaatgatacatggactcacttctttggctttctcatgcttgcagATGGTTTAGGAACCAAAGTCAATGATGAAGGCATTGCTTACTACAACAATCTCATTAATGCTCTTCTTGACAAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86058097|gb|DR353854.1|DR353854
EST:     AGGATTCGGTGCTTACAGATTTTCTATATCTTGGTCTCGAATTTTCCCTG                         ATGGCCTGGGAACTGAAGTCAATGAAGAAGGCATTGCTTTCTACAACGATC
genomic: AGGATTCGGTGCTTACAGATTTTCTATATCTTGGTCTCGAATTTTCCCTGgtatgtttaa ... acttttctagATGGCCTGGGAACTGAAGTCAATGAAGAAGGCATTGCTTTCTACAACGATC
EST: gi|86058095|gb|DR353852.1|DR353852
EST:     AGGATTCGGTGCTTACAGATTTTCTATATCTTGGTCTCGAATTTTCCCTG                         ATGGCCTGGGAACTGAAGTCAATGAAGAAGGCATTGCTTTCTACAACGATC
genomic: AGGATTCGGTGCTTACAGATTTTCTATATCTTGGTCTCGAATTTTCCCTGgtatgtttaa ... acttttctagATGGCCTGGGAACTGAAGTCAATGAAGAAGGCATTGCTTTCTACAACGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgaaaagtttgccgattgaagggcttattgtatttgtatgtcaacttttctagATGGCCTGGGAACTGAAGTCAATGAAGAAGGCATTGCTTTCTACAACGATCTTATTAATACACTTCTTGAAAAAG
                                              cttttct  CT-rich tract
                          ttattgtatttgtat  TA-rich tract