1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatactcttaaacgtttaatttcagatgttaaaacaacagtccctaacttttaatgtacagGTTATGATATTGAGTCACGACCGTGACAGAGGAAGAGTAAGTCTCTCCACAAAGAAGCTGGAGCCAACACCTGGTGATATGATTCGTAACCCAAAACTTG
species | Arabidopsis thaliana |
transcript | AT5G30510.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACCGTGTCTCAGATATCGCAACTGTTCTTCAGCCTGGTGACACTTTGAAG GTTATGATAT-GAGTCACGACCGTGACAGEST: gi|125063016|gb|EL131148.1|EL131148
genomic: ACCGTGTCTCAGATATCGCAACTGTTCTTCAGCCTGGTGACACTTTGAAGgtatactctt ... taatgtacagGTTATGATATTGAGTCACGACCGTGACAG
EST: CAGCCTGGTGACACTTTGAAG GTTATGGATATTGAGTACACGACCGTGACAGAGGAAGAGTAAGTCTCTCCAEST: gi|86074980|gb|DR370737.1|DR370737
genomic: CAGCCTGGTGACACTTTGAAGgtatactctt ... taatgtacagGTTAT-GATATTGAGT-CACGACCGTGACAGAGGAAGAGTAAGTCTCTCCA
EST: ACCGTGTCTCAGATATCGCAACTGTTCTTCAGCCTGGTGACACTTTGAAG GTTATGATATTGAGTCACGACCGTGACAGAGGAAGAGTAAGTCTCTCCACAEST: gi|125153548|gb|EL184640.1|EL184640
genomic: ACCGTGTCTCAGATATCGCAACTGTTCTTCAGCCTGGTGACACTTTGAAGgtatactctt ... taatgtacagGTTATGATATTGAGTCACGACCGTGACAGAGGAAGAGTAAGTCTCTCCACA
EST: ATATCGCAACTGTTCTTCAGCCTGGTGACACTTTGAAG GTTATGATATTGAGTCACGACCGTGACAGAGGAAGAGTAAGTCTCTCCACAEST: gi|125217781|gb|EL231864.1|EL231864
genomic: ATATCGCAACTGTTCTTCAGCCTGGTGACACTTTGAAGgtatactctt ... taatgtacagGTTATGATATTGAGTCACGACCGTGACAGAGGAAGAGTAAGTCTCTCCACA
EST: ACCGTGTCTCAGATATCGCAACTGTTCTTCAGCCTGGTGACACTTTGAAG GTTATGATATTGAGTCACGACCGTGACAGAGGAAGAEST: gi|125314161|gb|EL328246.1|EL328246
genomic: ACCGTGTCTCAGATATCGCAACTGTTCTTCAGCCTGGTGACACTTTGAAGgtatactctt ... taatgtacagGTTATGATATTGAGTCACGACCGTGACAGAGGAAGA
EST: TGACACTTTGAAG GTTATGATATTGAGTCACGACCGTGACAGAGGAAGAGTAAGTCTCTCCACAEST: gi|47832014|gb|CK121698.1|CK121698
genomic: TGACACTTTGAAGgtatactctt ... taatgtacagGTTATGATATTGAGTCACGACCGTGACAGAGGAAGAGTAAGTCTCTCCACA
EST: ACCGTGTCTCAGATATCGCAACTGTTCTTCAGCCTGGTGACACTTTGAAG GTTATGATATTGAGTCACGACCGTGEST: gi|124900564|gb|EH975182.1|EH975182
genomic: ACCGTGTCTCAGATATCGCAACTGTTCTTCAGCCTGGTGACACTTTGAAGgtatactctt ... taatgtacagGTTATGATATTGAGTCACGACCGTG
EST: CAACTGTTCTTCAGCCTGGTGACACTTTGAAG GTTATGATATTGAGTCACGACCGTGACAGAGGAAGAGTAAGTCTCTCCACAEST: gi|125033033|gb|EL105302.1|EL105302
genomic: CAACTGTTCTTCAGCCTGGTGACACTTTGAAGgtatactctt ... taatgtacagGTTATGATATTGAGTCACGACCGTGACAGAGGAAGAGTAAGTCTCTCCACA
EST: TGACACTTTGAAG GTTATGATATTGAGTCACGACCGTGACAGAGGAAGAGTAAGTCTCTCCACAEST: gi|124952318|gb|EL027600.1|EL027600
genomic: TGACACTTTGAAGgtatactctt ... taatgtacagGTTATGATATTGAGTCACGACCGTGACAGAGGAAGAGTAAGTCTCTCCACA
EST: ACACTTTGAAG GTTATGATATTGAGTCACGACCGTGACAGAGGAAGAGTAAGTCTCTCCACAEST: gi|124937257|gb|EL014047.1|EL014047
genomic: ACACTTTGAAGgtatactctt ... taatgtacagGTTATGATATTGAGTCACGACCGTGACAGAGGAAGAGTAAGTCTCTCCACA
EST: ATATCGCAACTGTTCTTCAGCCTGGTGACACTTTGAAG GTTATGATATTGAGTCACGACCGTGACAGAGGAAGAGTAAGTCTCTCCACAEST: gi|125212434|gb|EL227388.1|EL227388
genomic: ATATCGCAACTGTTCTTCAGCCTGGTGACACTTTGAAGgtatactctt ... taatgtacagGTTATGATATTGAGTCACGACCGTGACAGAGGAAGAGTAAGTCTCTCCACA
EST: CGCAACTGTTCTTCAGCCTGGTGACACTTTGAAG GTTATGATATTGAGTCACGACCGTGACAGAGGAAGAGTAAGTCTCTCCACA
genomic: CGCAACTGTTCTTCAGCCTGGTGACACTTTGAAGgtatactctt ... taatgtacagGTTATGATATTGAGTCACGACCGTGACAGAGGAAGAGTAAGTCTCTCCACA
cttaaacgtttaatttcagatgttaaaacaacagtccctaacttttaatgtacagGTTATGATATTGAGTCACGACCGTGACAGAGGAAGAGTAAGTCTCTCCACAAAGAAGCTGGAGCCAACACCTGGTGATATGATTCGTAACCCAAAACTTG
ctttt CT-rich tract
taacttttaatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatactcttaaacgtttaatttcagatgttaaaacaacagtccctaacttttaatgtacagGTTATGATATTGAGTCACGACCGTGACAGAGGAAGAGTAAGTCTCTCCACAAAGAAGCTGGAGCCAACACCTGGTGATATGATTCGTAACCCAAAACTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA