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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttcttatccatatactattttgttattgtatctcatactgcttctctgctaagctaatttctcatttctcaccgtctttctgttgaacttcttttctacagAAATATAGAACGGCAAGGTATAAACCGGAGACTTCGGAAGTTACAG

Basic information

species Arabidopsis thaliana
transcript AT5G29000.3
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86076345|gb|DR372102.1|DR372102
EST:     TCTTGAATAACCCTGGCTTGACCATTTATCATGTAAAAAGCCATTTGCAG                         AAATATAGAACGGCAAGGTATAAACCGGAGACTTCGGAAGTTACAG
genomic: TCTTGAATAACCCTGGCTTGACCATTTATCATGTAAAAAGCCATTTGCAGgtttgttctt ... ttttctacagAAATATAGAACGGCAAGGTATAAACCGGAGACTTCGGAAGTTACAG
EST: gi|86085768|gb|DR381527.1|DR381527
EST:     TCTTGAATAACCCTGGCTTGACCATTTATCATGTAAAAAGCCATTTGCAG                         AAATATAGAACGGCAAGGTATAAACCGGAGACTTCGGAAGTTACAG
genomic: TCTTGAATAACCCTGGCTTGACCATTTATCATGTAAAAAGCCATTTGCAGgtttgttctt ... ttttctacagAAATATAGAACGGCAAGGTATAAACCGGAGACTTCGGAAGTTACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctaagctaatttctcatttctcaccgtctttctgttgaacttcttttctacagAAATATAGAACGGCAAGGTATAAACCGGAGACTTCGGAAGTTACAG
                   ttctcac  putative branch site (score: 2)
                                         cttcttttctac  putative PPT
        taatttct  TA-rich tract