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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaatctctcttcagtgtttttgctttgctgaatccatcaatagttggattatgatctgttgaaagttgtttgatatctttagGCACACCAGAGTTCATGGCTCCTGAAGTTTATAAAGAAGAATATAACCAATTAGTCGATATTTACTCGTTCGGTATGTGTGTTTTGGAAATGGTAACGTT

Basic information

species Arabidopsis thaliana
transcript AT5G28080.1
intron # 4
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgaatccatcaatagttggattatgatctgttgaaagttgtttgatatctttagGCACACCAGAGTTCATGGCTCCTGAAGTTTATAAAGAAGAATATAACCAATTAGTCGATATTTACTCGTTCGGTATGTGTGTTTTGGAAATGGTAACGTT
                                        gtttgat  putative branch site (score: 5)
                                              tatcttt  CT-rich tract
                                             atatcttta  TA-rich tract