1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtagtattgacttgcactttgccgacctccttgctctgtgttaaagggtttttgtgctatagggtttcaattgtaatgctattttggcctcagGTGCTGAAATCGCTGGAGCAAGAGGCTTTTTCTTGAAAGGAGATGGTTTGATGCTTAACCAAGCTCTTATCAACTTTGGGTTAACTTTCTTGAAAAAGAG
species | Arabidopsis thaliana |
transcript | AT5G27470.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAACCATGTGGATCTTGTTGAGCTTCTCGGTATTGCAGATACCAAAAGAG GTGCTGAAATCGCTGGAGCAAGAGGCTTTTTCTTGAAAGGAGATGGNTTGAEST: gi|125259641|gb|EL273726.1|EL273726
genomic: AAACCATGTGGATCTTGTTGAGCTTCTCGGTATTGCAGATACCAAAAGAGgtagtattga ... ttggcctcagGTGCTGAAATCGCTGGAGCAAGAGGCTTTTTCTTGAAAGGAGATGGTTTGA
EST: AAACCATGTGGATCTTGTTGAGCTTCTCGGTATTGCAGATACCAAAAGAG GTGCTGAAATCGCTGGAGCAAGAGEST: gi|124866045|gb|EH950482.1|EH950482
genomic: AAACCATGTGGATCTTGTTGAGCTTCTCGGTATTGCAGATACCAAAAGAGgtagtattga ... ttggcctcagGTGCTGAAATCGCTGGAGCAAGAG
EST: TTGAGCTTCTCGGTATTGCAGATACCAAAAGAG GTGCTGAAATCGCTGGAGCAAGAGGCTTTTTCTTGAAAGGAGATGGTTTGA
genomic: TTGAGCTTCTCGGTATTGCAGATACCAAAAGAGgtagtattga ... ttggcctcagGTGCTGAAATCGCTGGAGCAAGAGGCTTTTTCTTGAAAGGAGATGGTTTGA
tgttaaagggtttttgtgctatagggtttcaattgtaatgctattttggcctcagGTGCTGAAATCGCTGGAGCAAGAGGCTTTTTCTTGAAAGGAGATGGTTTGATGCTTAACCAAGCTCTTATCAACTTTGGGTTAACTTTCTTGAAAAAGAG
ctatttt CT-rich tract
aattgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtattgacttgcactttgccgacctccttgctctgtgttaaagggtttttgtgctatagggtttcaattgtaatgctattttggcctcagGTGCTGAAATCGCTGGAGCAAGAGGCTTTTTCTTGAAAGGAGATGGTTTGATGCTTAACCAAGCTCTTATCAACTTTGGGTTAACTTTCTTGAAAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT