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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactcttatctgaaaccatcccaacagagaatattgtcttatgttcagcttgtatctgccttttaactcaaaatacttgcagGTTATATGGGATCATGAGTGTTTGCTACCACGCATTATACCTTCCTCTTCTTTACATAACGTTCCTCGCAGACTTTTTCCAG

Basic information

species Arabidopsis thaliana
transcript AT5G27210.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86082752|gb|DR378511.1|DR378511
EST:     TACCTAGTTGCATCTGCGTTTACCGCAAACAACGCGCATTTTGGTTTCTG                         GTTATATGGGATCATGAGTGTTTGCTACCACGCATTATACCTTCCTCTTCT
genomic: TACCTAGTTGCATCTGCGTTTACCGCAAACAACGCGCATTTTGGTTTCTGgtaactctta ... atacttgcagGTTATATGGGATCATGAGTGTTTGCTACCACGCATTATACCTTCCTCTTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaatattgtcttatgttcagcttgtatctgccttttaactcaaaatacttgcagGTTATATGGGATCATGAGTGTTTGCTACCACGCATTATACCTTCCTCTTCTTTACATAACGTTCCTCGCAGACTTTTTCCAG
                                 ttttaac  putative branch site (score: 2)
                                 ttttaactcaaaata  TA-rich tract