Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtttcttttttctttcctcatgaccattctgtatgttgcagatgaggtttggatgacttcgttgttggatgattcattgtgcatatgttctcttgcagCCTCAATTGGCAGCACCAGTTGTGCAAGAATCCTAGGCCAAACCCAGATATTAAAACTCTATTCACAGACCACACTTGCACACTTCCGAATGGTCCTCTC

Basic information

species Arabidopsis thaliana
transcript AT5G27030.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G27030.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G316967_T01 (Zea mays), 3'ss of exon 4
gtgtgtttcttttttctttcctcatgaccattctgtatgttgcagatgaggtttggatgacttcgttgttggatgattcattgtgcatatgttctcttgcagCCTCAATTGGCAGCACCAGTTGTGCAAGAATCCTAGGCCAAACCCAGATATTAAAACTCTATTCACAGACCACACTTGCACACTTCCGAATGGTCCTCTC
  || |     |  |||       | ||  |   | || || | | |    ||   ||   ||   ||| |  |||||       || ||||      ||||| | ||||||||||| ||| | || ||||| ||| | ||||| |||||||| |||||| ||||||| ||||| || ||  | |  || |||||  |||  
--gtttgaaagtaatctaatgctgttactttaacggatatt-ctgtttccattccaatatttttagtgt-gactgatttcccccccaaatgt------gcagCTTGAATTGGCAGCATCAGCTTTGTAAGAACCCTCGTCCAAATCCAGATATCAAAACTTTATTCACCGACCATACATGTTCTCCACCCAATGGAGCTCGT

upper sequence: AT5G27030.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA19G41840.1 (Glycine max), 3'ss of exon 4
----gtgtgtttcttttttctttcctcatgaccattctgtatgttgcagatgaggtttggatgacttcgttgttggatgattcattgtgcatatgttctcttgcagCCTCAATTGGCAGCACCAGTTGTGCAAGAATCCTAGGCCAAACCCAGATATTAAAACTCTATTCACAGACCACACTTGCACACTTCCGAATGGTCCTCTC
     | ||||  || ||  |    | |||   |||   | | |  |     | |  |           || ||    ||||   ||||    |  ||  | ||||  | |||||||| |||||| | ||||| || ||||||||||| || ||||| || ||| ||||||| |||||||| || |||| ||| ||||||||||| 
gattatatgttatttattattaatttaatg--tatttgatttttaacttgctatgccttatcattgcttttattaaccgatt---tgtgtccctaatcaat-gcagTTTAAATTGGCAACACCAGCTTTGCAAAAACCCTAGGCCAAATCCGGATATAAAGACTTTATTCACTGACCACACATGTACACCTCCTAATGGTCCTCTA

upper sequence: AT5G27030.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA20G38230.1 (Glycine max), 3'ss of exon 4
gtgtgtttcttttttctttcctcatgaccattctgtatgtt--gcagatgaggtttggatgacttcgttgttggatgattcat-tgtgcatatgttctcttgcagCCTCAATTGGCAGCACCAGTTGTGCAAGAATCCTAGGCCAAACCCAGATATTAAAACTCTATTCACAGACCACACTTGCACACTTCCGAATGGTCCTCTC
    ||| |||||||  ||| |  |    | | || || ||  ||       |  | |   | ||  |  |  |   ||| || | |||   |  ||  | |||| || || |||||||| ||| | ||||| || || |||||||| ||||||||||| ||| |||||||||| ||||| ||  ||| ||| ||||||||||| 
----gttccttttttaattcattcttgtaaatttgaatttttagcgtgctgtgccttgcctattttttaatcagtgaatttatctatgccccttatcaat-gcagTCTAAACTGGCAGCATCAGCTCTGCAAAAACCCAAGGCCAAATCCAGATATTAAGACTTTATTCACAGATCACACATGTGCACCTCCCAATGGTCCTCTG

upper sequence: AT5G27030.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA03G39290.1 (Glycine max), 3'ss of exon 5
gtgtgtttcttttttctttcctcatgaccattctgtatgttgcagatgaggtttggatgacttcgttgttggatgattcattgtgcatatgttctctt-------gcagCCTCAATTGGCAGCACCAGTTGTGCAAGAATCCTAGGCCAAACCCAGATATTAAAACTCTATTCACAGACCACACTTGCACACTTCCGAATGGTCCTCTC
         ||||   |      || |   ||   ||  ||  |  |     |||     | | ||  |||  |  ||  |    ||| ||||  | |       ||||  | || ||||| |||||| | ||||| || ||||||||||| || ||||| || ||| ||||||| |||||||| || |||| ||| ||||||||||| 
-------ggttttaattgattatattattgtttaataaatttaatttttaacttgctatgccttgtcattgctt--ttattaacccatgtgtttccctaatcaatgcagTTTAAACTGGCAACACCAGCTTTGCAAAAACCCTAGGCCAAATCCGGATATAAAGACTTTATTCACTGACCACACATGTACACCTCCTAATGGTCCTCTA

upper sequence: AT5G27030.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA10G29090.1 (Glycine max), 3'ss of exon 4
gtgtgtttcttttttctttcctcatgaccattctgtatgtt--gcagatgaggtttggatgacttcgttgttggatgattcat-tgtgcatatgttctcttgcagCCTCAATTGGCAGCACCAGTTGTGCAAGAATCCTAGGCCAAACCCAGATATTAAAACTCTATTCACAGACCACACTTGCACACTTCCGAATGGTCCTCTC
     || |||||||   |  |  |    | |  | || ||  ||     | |  | |   | ||  |  |  |   ||| || | |||  ||  ||  | |||| || || |||||||| ||| | ||||| || || |||||||| ||||||||||| ||| |||||||||| ||||| ||  ||| ||| ||||||||||| 
----attccttttttaaatgattcttgtaaattcgaatttttagcttgctatgccttgcctattttttaatcagtgaatttatctatgcccattatcaat-gcagTCTAAACTGGCAGCATCAGCTCTGCAAAAACCCAAGGCCAAATCCAGATATTAAGACTTTATTCACAGATCACACATGTGCACCTCCTAATGGTCCTCTG

upper sequence: AT5G27030.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 4
gtgtgtttcttttttctttcctcatgaccattctgtatgt-tgcaga-tgaggtttggatgacttcgttgttggatgattcattgtgcatatgttctct-----tgcagCCTCAATTGGCAGCACCAGTTGTGCAAGAATCCTAGGCCAAACCCAGATATTAAAACTCTATTCACAGACCACACTTGCACACTTCCGAATGGTCCTCTC
          |||   | | ||  ||    ||       |   || | | |    |  ||||| | |||||   |   |  | | || ||  || |        |||||  | ||||||||||||||| | |||||||| ||  ||||||| ||||| ||||| ||  ||||||||||||| || ||  | | | | |||||  |||| 
--------actttacatatactgctgtgtgttacacgcatacacacactcaaacatatatgacct-gttgtatcaaactctagtatgaatgagtccatggtgtatgcagTTTAAATTGGCAGCACCAGCTTTGCAAGAACCCCCGGCCAAATCCAGACATTAAGACATTATTCACAGACCATACATGTGCCCCTTCAAATGGGGCTCTT

upper sequence: AT5G27030.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: EFJ36405 (Selaginella moellendorffii), 3'ss of exon 8
gtgtgtttcttttttctttcctcatgaccattctgtatgttgcagatgaggtttggatgacttcgttgttggatgattcattgtgcatatgttctcttg---cagCCTCAATTGGCAGCACCAGTTGTGCAAGAATCCTAGGCCAAACCCAGATATTAAAACTCTATTCACAGACCACACTTGCACACTTCCGAATGGTCCTCTC
                                  ||  ||  | | |         |   ||  | || | || ||   |   | | | | |||| ||    ||||||||||||||| || ||| | ||||||||||||||||| ||||||||||| |||||||| ||   ||| || || || |     ||||||||  | | |
----------------------------------gtgcgtccctgcttttccagctacttctgtgctgatagaagaaatacatttctttttttcttttttcccagCCTCAATTGGCAACATCAGCTTTGCAAGAATCCTAGGCCCAACCCAGATATCAAAACTCTGTTTGTAGATCATACCTGTAGCGCGCCGAATGGAGCCCGC

upper sequence: AT5G27030.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: EFJ32018 (Selaginella moellendorffii), 3'ss of exon 4
gtgtgtttcttttttctttcctcatgaccattctgtatgttgcagatgaggtttggatgacttcgttgttggatgattcattgtgcatatgttctcttgcagCCTCAATTGGCAGCACCAGTTGTGCAAGAATCCTAGGCCAAACCCAGATATTAAAACTCTATTCACAGACCACACTTGCACACTTCCGAATGGTCCTCTC
                         |  | | |    | || ||| |     |  | |||  | |  |    |||  |   | |   | | || |  | ||||||||||||||| || ||| | ||||||||||||||||| ||||||||||| |||||||| ||   ||| || || ||       ||||||||  | | |
-------------------------gtgcgtacctgcttttccagctacttctgtgctga--tagaag--aaatgcatttctttttttctttttttgtccagCCTCAATTGGCAACATCAGCTTTGCAAGAATCCTAGGCCCAACCCAGATATCAAAACTCTGTTTGTAGATCATACCTGTGGCGCGCCGAATGGAGCCCGC

upper sequence: AT5G27030.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: EFJ37833 (Selaginella moellendorffii), 3'ss of exon 4
gtgtgtttcttttttctttcctcatgaccattctgtatgttgcagatgaggtttggatgacttcgttgttggatga--ttcattg-tgcatatgttctcttgcagCCTCAATTGGCAGCACCAGTTGTGCAAGAATCCTAGGCCAAACCCAGATATTAAAACTCTATTCACAGACCACACTTGCACACTTCCGAATGGTCCTCTC
                                  ||  ||  | | |         |   ||  | || | || ||  | ||||  |   | | || | || ||||||||||||||| || ||| | ||||||||||||||||| ||||||||||| |||||||| ||   ||| || || ||       ||||||||  | | |
----------------------------------gtgcgtacctgcttttccagctacttctgtgctgatagaagaaatgcatttctttgtttatttttttccagCCTCAATTGGCAACATCAGCTTTGCAAGAATCCTAGGCCCAACCCAGATATCAAAACTCTGTTTGTAGATCATACCTGTGGCGCGCCGAATGGAGCCCGC

upper sequence: AT5G27030.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: EFJ35798 (Selaginella moellendorffii), 3'ss of exon 4
gtgtgtttcttttttctttcctcatgaccattctgtatgttgcagatgaggtttggatgacttcgttgttggatgattcattgtgcatatgttctcttgcagCCTCAATTGGCAGCACCAGTTGTGCAAGAATCCTAGGCCAAACCCAGATATTAAAACTCTATTCACAGACCACACTTGCACACTTCCGAATGGTCCTCTC
                         |  | | |    | || ||| |     |  | |||     | |  | |  |    | ||   | | || | |  ||||||||||||||| || ||| | ||||||||||||||||| ||||||||||| |||||||| ||   ||| || || ||       ||||||||  | | |
-------------------------gtgcgtccctgcttttccagctacttctgtgctga-----tagaagaaatacatttcgtttttttcttttttcccagCCTCAATTGGCAACATCAGCTTTGCAAGAATCCTAGGCCCAACCCAGATATCAAAACTCTGTTTGTAGATCATACCTGTGGCGCGCCGAATGGAGCCCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaggtttggatgacttcgttgttggatgattcattgtgcatatgttctcttgcagCCTCAATTGGCAGCACCAGTTGTGCAAGAATCCTAGGCCAAACCCAGATATTAAAACTCTATTCACAGACCACACTTGCACACTTCCGAATGGTCCTCTC
                                          tgttctctt  CT-rich tract
                            attcatt  TA-rich tract