1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtatcttcagaggttgtgataaagttctcttgattagttacttatgattcatgaccatggatatgtcttccctcagGTACTAATTGATTTTGGCTTGAGCGTCACATCGACCTTGCCTGAAGACAAAGCTGTTGATTTATATGTACTTGAAAGAGCCTTACTCTCAATGCATTCGT
species | Arabidopsis thaliana |
transcript | AT5G26110.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGATTTGACCACATCAAATATGTTAGTCAGAAGTGGAACAAATCAGCTG GTACTAATTGATTTTGGEST: gi|116425418|gb|EG468010.1|EG468010
genomic: GTGATTTGACCACATCAAATATGTTAGTCAGAAGTGGAACAAATCAGCTGgtaagtatct ... cttccctcagGTACTAATTGATTTTGG
EST: GTGATTTGACCACATCAAATATGTTAGTCAGAAGTGGAACAAATCAGCTG GTACTAATTGATTTTGGCTTGAGCGTCACATCGCCCTTGCCTGAAGACAAAEST: gi|124877874|gb|EH957311.1|EH957311
genomic: GTGATTTGACCACATCAAATATGTTAGTCAGAAGTGGAACAAATCAGCTGgtaagtatct ... cttccctcagGTACTAATTGATTTTGGCTTGAGCGTCACATCGACCTTGCCTGAAGACAAA
EST: GTGATTTGACCACATCAAATATGTTAGTCAGAAGTGGAACAAATCAGCTG GTACTAATTGATTTTGGCTEST: gi|116425432|gb|EG468024.1|EG468024
genomic: GTGATTTGACCACATCAAATATGTTAGTCAGAAGTGGAACAAATCAGCTGgtaagtatct ... cttccctcagGTACTAATTGATTTTGGCT
EST: GTGATTTGACCACATCAAATATGTTAGTCAGAAGTGGAACAAATCAGCTG GTACTAATTGATTTTGGCTTGAGCGTCACATCGACCTTGCCTGAAGACAAAEST: gi|86077697|gb|DR373454.1|DR373454
genomic: GTGATTTGACCACATCAAATATGTTAGTCAGAAGTGGAACAAATCAGCTGgtaagtatct ... cttccctcagGTACTAATTGATTTTGGCTTGAGCGTCACATCGACCTTGCCTGAAGACAAA
EST: GTGATTTGACCACATCAAATATGTTAGTCAGAAGTGGAACAAATCAGCTG GTACTAATTGATTTTGGCTTGAGCGTCACATCGACCTTGCCTGAAGACAAA
genomic: GTGATTTGACCACATCAAATATGTTAGTCAGAAGTGGAACAAATCAGCTGgtaagtatct ... cttccctcagGTACTAATTGATTTTGGCTTGAGCGTCACATCGACCTTGCCTGAAGACAAA
aagttctcttgattagttacttatgattcatgaccatggatatgtcttccctcagGTACTAATTGATTTTGGCTTGAGCGTCACATCGACCTTGCCTGAAGACAAAGCTGTTGATTTATATGTACTTGAAAGAGCCTTACTCTCAATGCATTCGT
tcttgat putative branch site (score: 4)
tgtcttccctc putative PPT
attagtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatcttcagaggttgtgataaagttctcttgattagttacttatgattcatgaccatggatatgtcttccctcagGTACTAATTGATTTTGGCTTGAGCGTCACATCGACCTTGCCTGAAGACAAAGCTGTTGATTTATATGTACTTGAAAGAGCCTTACTCTCAATGCATTCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT