Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagttaaaaaataatgtttttaaagtgatgaaatgccaacaattatctatagtcagtactgagaatcttgggtgtaaatttagGTCTTGGTGCAGCATGGAATGTTGCTGATGTACAAAAAGGTTCAAGTGTTGTGATATTTGGTCTTGGAACTGTCGGTCTTTCT

Basic information

species Arabidopsis thaliana
transcript AT5G24760.3
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G24760.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA09G29070.1 (Glycine max), 3'ss of exon 4
------------------gtagttaaaaaataatgtttttaaagtgatgaaatgccaacaattatctatagtcagtactgagaatc-ttgggtgtaaat-ttagGTCTTGGTGCAGCATGGAATGTTGCTGATGTACAAAAAGGTTCAAGTGTTGTGATATTTGGTCTTGGAACTGTCGGTCTTTCT
                  |||| |   |  || |||||  |   |  ||| ||   |   ||| | |   ||   |  || || || |||  | | ||   ||||||||||||||||||||||||||||||||||   |||||| |||| ||| ||||| ||||||||||||||||| || || |||
gttaccagtgtcaaagccgtagatcccatttagtgtttg-atgttattgatatattattcatttttt---gttgattatgggactcattgcatttcaacactagGTCTTGGTGCAGCATGGAATGTTGCTGATGTGTCAAAAGGATCAACTGTGGTGATTTTTGGTCTTGGAACTGTTGGCCTATCT

upper sequence: AT5G24760.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA16G23820.1 (Glycine max), 3'ss of exon 6
----------------gtagttaaaaaataatgtttttaaagtgatgaaatgccaacaattatctata-gtcagtactgagaatcttgggtgtaaat--ttagGTCTTGGTGCAGCATGGAATGTTGCTGATGTACAAAAAGGTTCAAGTGTTGTGATATTTGGTCTTGGAACTGTCGGTCTTTCT
                 ||| |   ||  | |||| |||| || ||  |     ||  ||||| | |  ||   |  || || || |   | ||||   |||||||| || |||||||||||||||||||| ||   |||||| |||| ||| ||||| ||||||||||||||||| || || |||
agacactgtcagagccatagatcccaataagtgttgttaatgtcattga---taaattattatttttttgttgattatgggactcatttttttaaaacattagGTCTGGGCGCAGCATGGAATGTTGCTGACGTGTCAAAAGGATCAACTGTGGTGATTTTTGGTCTTGGAACTGTTGGCCTATCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164069763|gb|ES023133.1|ES023133
EST:     CTGTGGAGTAGCTGCAG                         GTCTTGGTGCAGCATGGAATGTTGCTGATGTACAAAAAGGTTCAAGTGTTG
genomic: CTGTGGAGTAGCTGCAGgtagttaaaa ... gtaaatttagGTCTTGGTGCAGCATGGAATGTTGCTGATGTACAAAAAGGTTCAAGTGTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaatgccaacaattatctatagtcagtactgagaatcttgggtgtaaatttagGTCTTGGTGCAGCATGGAATGTTGCTGATGTACAAAAAGGTTCAAGTGTTGTGATATTTGGTCTTGGAACTGTCGGTCTTTCT
         aacaattatctata  TA-rich tract