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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgttcatttatccctcgaaaccgtttcattttaaatagttgttcaaatgttcattagagagtgactgataagcatgatcttatttaaatagttgctcaaatgttcattagagattgactgataagcatgatcttatggcgtgttaaaatgtcagGCCTCATTACAATGTGAATCTGCTGAGCATCTCAGTAAATGGCCAAGCTTTACCTATCAATCCATCGGTCTTCTCTACATCAAACGGCCAGGGAACAATC

Basic information

species Arabidopsis thaliana
transcript AT5G22850.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G22850.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA11G19640.2 (Glycine max), 3'ss of exon 4
gtgagtgttcatttatccctcgaaaccgtttcattttaaatagttgttcaaatgttcattagagagtgactgataagcatgatcttattta-aatag--ttgctcaaatgttcattagagattgactgataagcatgatcttatggcgtgttaaaatgtcagGCCTCATTACAATGTGAATCTGCTGAGCATCTCAGTAAATGGCCAAGCTTTACCTATCAATCCATCGGTCTTCTCTACATCAAACGGCCAGGGAACAATC
                                                              | |   | |  ||| |||  |  ||||   ||| |  |||    ||| ||| || | ||   | || ||  | | ||    |     |  || || ||||||||||||||||| | ||||||| ||||||||| || |||||||||  | | |  ||    || || || ||  |||||||||||  |   || || || 
------------------------------------------------------------ccaaatatattactaaacatatttgtattgggaatggctttggaagaatattcttt-gtgaaaaattgttagac-taattgcttccttgggaaatatttcagGCCTCATTACAATTTAAATCTGCAGAGCATCTCTGTTAATGGCCAAATTGTGCGGATTGCCCCTTCAGTTTTTGCTACATCAAACAACAGAGGTACCATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86063836|gb|DR359593.1|DR359593
EST:     GGAGAGATTGTGGAGCCAAACATGGTCTTTACTCCACTTGTTCCCTCACA                         GCCTCATTACAATGTGAATCTGCTGAGCATCTCAGTAAATGGCCAAGCTTT
genomic: GGAGAGATTGTGGAGCCAAACATGGTCTTTACTCCACTTGTTCCCTCACAgtgagtgttc ... aaaatgtcagGCCTCATTACAATGTGAATCTGCTGAGCATCTCAGTAAATGGCCAAGCTTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttcattagagattgactgataagcatgatcttatggcgtgttaaaatgtcagGCCTCATTACAATGTGAATCTGCTGAGCATCTCAGTAAATGGCCAAGCTTTACCTATCAATCCATCGGTCTTCTCTACATCAAACGGCCAGGGAACAATC
                gactgat  putative branch site (score: 3)
                                         tgttaaaat  TA-rich tract