1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tagtggaagcaaatggaaggcggatcttaaatgtgtttttgtcataaatcatttaaaaattattgtagatgtactaaagttatcaaaaataatattatagGAACCGCCGGAATATGGAGAATAGCGGCGATAAATGAAGCTGGTGGGTGGAAAGATCGGACCACCGTGGAAGATATGGATCTCGCCGTCCGAGCAAGTCT
species | Arabidopsis thaliana |
transcript | AT5G22740.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTTGAGCAAGAAGTGGGTTCATCAACACATGCTTTTTTCGGCTTCAACG GANNNGCCGGAATATGGAGAATAGCGGCGATAAATGAAGCTGGTGGGTGGAEST: gi|86052420|gb|DR348177.1|DR348177
genomic: TGTTGAGCAAGAAGTGGGTTCATCAACACATGCTTTTTTCGGCTTCAACGgtaaacacaa ... aatattatagGAACCGCCGGAATATGGAGAATAGCGGCGATAAATGAAGCTGGTGGGTGGA
EST: TTTTCGGCTTCAACG GAACCGCCGGAATATGGAGAATAGCGGCGATAAATGAAGCTGGTGGGTGGAEST: gi|86052419|gb|DR348176.1|DR348176
genomic: TTTTCGGCTTCAACGgtaaacacaa ... aatattatagGAACCGCCGGAATATGGAGAATAGCGGCGATAAATGAAGCTGGTGGGTGGA
EST: TGTTGAGCAAGAAGTGGGTTCATCAACACATGCTTTTTTCGGCTTCAACG GAACCGCCGGAATATGGAGAATAGCGGCGATAAATGAAGCTGGTGGGTGGA
genomic: TGTTGAGCAAGAAGTGGGTTCATCAACACATGCTTTTTTCGGCTTCAACGgtaaacacaa ... aatattatagGAACCGCCGGAATATGGAGAATAGCGGCGATAAATGAAGCTGGTGGGTGGA
aaatcatttaaaaattattgtagatgtactaaagttatcaaaaataatattatagGAACCGCCGGAATATGGAGAATAGCGGCGATAAATGAAGCTGGTGGGTGGAAAGATCGGACCACCGTGGAAGATATGGATCTCGCCGTCCGAGCAAGTCT
tactaaa putative branch site (score: 1)
tagatgtactaaagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtggaagcaaatggaaggcggatcttaaatgtgtttttgtcataaatcatttaaaaattattgtagatgtactaaagttatcaaaaataatattatagGAACCGCCGGAATATGGAGAATAGCGGCGATAAATGAAGCTGGTGGGTGGAAAGATCGGACCACCGTGGAAGATATGGATCTCGCCGTCCGAGCAAGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - aagcaaa
- - - - - - - - - - - - - - - - - gtttttg
- - - - - - - - - - - - - - - - - - - - - - taaatca
- - - - - - - - - - - - - - - - - - - - - - - - - - ttaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaat