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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgatctaaaaatacaaacagaaaaatgtctttttagttgatttcctctctattccttattcatacatatacattgtatattatatggttttcatatcagGGAGAAAGGTCGGTATCGCTATGCTGGTCAATGGAAGCACAGTCGAATGCATGGGTGTGGTGTCTATGAAGTTAACGAACGCATCCTATAT

Basic information

species Arabidopsis thaliana
transcript AT5G22640.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125092508|gb|EL150331.1|EL150331
EST:     GTTCCTTTCTATGAAAACGAAGAATGGGTCACACAGTTTGGCGAGAAACC                         GGAGAAAGGTCGGTATCGCTATGCTGGTCAATGG
genomic: GTTCCTTTCTATGAAAACGAAGAATGGGTCACACAGTTTGGCGAGAAACCgtgagtctgc ... ttcatatcagGGAGAAAGGTCGGTATCGCTATGCTGGTCAATGG
EST: gi|124735936|gb|EH827338.1|EH827338
EST:     GTTCCTTTCTATGAAAACGAAGAATGGGTCACACAGTTTGGCGAGAAACC                         GGAGAAAGGTCGGTATCGCTA
genomic: GTTCCTTTCTATGAAAACGAAGAATGGGTCACACAGTTTGGCGAGAAACCgtgagtctgc ... ttcatatcagGGAGAAAGGTCGGTATCGCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctctattccttattcatacatatacattgtatattatatggttttcatatcagGGAGAAAGGTCGGTATCGCTATGCTGGTCAATGGAAGCACAGTCGAATGCATGGGTGTGGTGTCTATGAAGTTAACGAACGCATCCTATAT
                                           ttttcat  CT-rich tract
           ttattcatacatatac  TA-rich tract