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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcatctatactgtttatttgttatcttttcatttgtgttttgctttgtttctcttgtgacataatatcccctttagttgataaagtttaatattttataaatattcttgttttgttggcagTCCTGCGATTACAGAAAGTAGAGTTACTACAGTCCAGTGCTTGTCTGGTACTGGTTCGTTGAGAGTTGGGGCTGAGTTTCTCAAAACACACTACCACCAA

Basic information

species Arabidopsis thaliana
transcript AT5G19550.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116439194|gb|EG481786.1|EG481786
EST:     ATTTCCGATTTTAACAAGTTAAGCGCCAAGCTCATCTTAGGTGCTGACAG                         TCCTGCGATTACAGAAAGTAGAGTTACTACAGTCCAGTGCTTGTCTGGTAC
genomic: ATTTCCGATTTTAACAAGTTAAGCGCCAAGCTCATCTTAGGTGCTGACAGgtaatcatct ... ttgttggcagTCCTGCGATTACAGAAAGTAGAGTTACTACAGTCCAGTGCTTGTCTGGTAC
EST: gi|125297732|gb|EL311817.1|EL311817
EST:     ATTTCCGATTTTAACAAGTTAAGCGCCAAGCTCATCTTAGGTGCTGACAG                         TCCTGCGATTACAGAAAGTAGAGTTACTACA
genomic: ATTTCCGATTTTAACAAGTTAAGCGCCAAGCTCATCTTAGGTGCTGACAGgtaatcatct ... ttgttggcagTCCTGCGATTACAGAAAGTAGAGTTACTACA
EST: gi|116439128|gb|EG481720.1|EG481720
EST:     ATTTCCGATTTTAACAAGTTAAGCGCCAAGCTCATCTTAGGTGCTGACAG                         TCCTGCGATTACAGAAAGTAGAGTTACTACAGTCCAGTGCTTGTCTGGTAC
genomic: ATTTCCGATTTTAACAAGTTAAGCGCCAAGCTCATCTTAGGTGCTGACAGgtaatcatct ... ttgttggcagTCCTGCGATTACAGAAAGTAGAGTTACTACAGTCCAGTGCTTGTCTGGTAC
EST: gi|116442567|gb|EG485159.1|EG485159
EST:     ATTTCCGATTTTAACAAGTTAAGCGCCAAGCTCATCTTAGGTGCTGACAG                         TCCTGCGATTACAGAAAGTAGAGTTACTACAGTCCAGTGCTCGTCTGGTAC
genomic: ATTTCCGATTTTAACAAGTTAAGCGCCAAGCTCATCTTAGGTGCTGACAGgtaatcatct ... ttgttggcagTCCTGCGATTACAGAAAGTAGAGTTACTACAGTCCAGTGCTTGTCTGGTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcccctttagttgataaagtttaatattttataaatattcttgttttgttggcagTCCTGCGATTACAGAAAGTAGAGTTACTACAGTCCAGTGCTTGTCTGGTACTGGTTCGTTGAGAGTTGGGGCTGAGTTTCTCAAAACACACTACCACCAA
                  gtttaat  putative branch site (score: 4)
                                     ttcttgtttt  putative PPT
     tttagttgataaagtt  TA-rich tract