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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcaatgaattctttctgtagtctctctgaaatagactcttctttcctagtgaatacgtatttggtttattcatggtaaactcgattcttacttctgcagGTTCATCGTGGGAAAACCTTTGATCCTGATGAACCAGAACATATGAAGTGGGTTTATGATGAG

Basic information

species Arabidopsis thaliana
transcript AT5G19180.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G19180.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: LOC_Os01g16540.1 (Oryza sativa), 3'ss of exon 4
gtatgtcaatgaattctttctgtagtctctctgaaatagactcttctttcctagtgaatacgtatttggtttattcatggtaaactcgattcttacttctgcagGTTCATCGTGGGAAAACCTTTGATCCTGATGAACCAGAACATATGAAGTGGGTTTATGATGAG
              |  |  | |||| ||| |  ||| |      || |   |     | |              |      || |  | ||  |||  || ||||||||| ||||||| | |||||| |||||||  ||||||||||| ||||| ||||    |||
-------------gtactgttctagtttctgtataattg------ctctttgaactcctccccccccccccccccccccaataattaaagtc--actcttgtagGTTCATCCTGGGAAACCTTTTGATGCTGATGATGCAGAACATATGCAGTGGATTTACTCAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctagtgaatacgtatttggtttattcatggtaaactcgattcttacttctgcagGTTCATCGTGGGAAAACCTTTGATCCTGATGAACCAGAACATATGAAGTGGGTTTATGATGAG
                                        ttcttac  putative branch site (score: 2)
                                        ttcttacttct  CT-rich tract
                    tttattcat  TA-rich tract