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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtcttcttcttcactatgatttttaggtttctattgagtgaatttctctaagtctgatttcaccgtgaacaattgcagAGCATTAGGGTAAAGCTTGAGGAAACTCTTCCTGGAACTGGAGGTGGTAGTAACCAACATGATGAACTCGTCGTCAAGTTCCTTTTCTTGTTACCTCTTT

Basic information

species Arabidopsis thaliana
transcript AT5G18480.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86060782|gb|DR356539.1|DR356539
EST:     CTTGGGACTGGTGGACAGCATGGCTCGTGAAACCTGTTGATGCTTGGCAT                         AGCATCAGGGTAAAGCTTGAGGAAACTCTTCCTGGAACTGGAGGTGGCAGT
genomic: CTTGGGACTGGTGGACAGCATGGCTCGTGAAACCTGTTGATGCTTGGCATgtaggtcttc ... acaattgcagAGCATTAGGGTAAAGCTTGAGGAAACTCTTCCTGGAACTGGAGGTGGTAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taggtttctattgagtgaatttctctaagtctgatttcaccgtgaacaattgcagAGCATTAGGGTAAAGCTTGAGGAAACTCTTCCTGGAACTGGAGGTGGTAGTAACCAACATGATGAACTCGTCGTCAAGTTCCTTTTCTTGTTACCTCTTT
                            gtctgat  putative branch site (score: 4)
     ttctatt  TA-rich tract