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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttttattttcttgtgggcactactattggagtattgacacctttctactttattcaaaagaaacccttttgtcaatgttatttataatccattttacatacttagggtctgagaatcatgttaaatactcttccgtttatttgttttcttcagCTTCTTGCGTTGGTAGGCGACCAGCTTGATGATGCTGATAACATATGTGGGGCAGTACTGAGTGTCCGTTTCAACGAGGACATCATTAGTGTATGGAATC

Basic information

species Arabidopsis thaliana
transcript AT5G18110.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116398426|gb|EG441018.1|EG441018
EST:     GGATCATACGTTTCTCAAAAGTTGTATCTGCTCGCTTCTGGGAGGATCTG                         CTTCTTGCGTTGGTAGGCGACCAGCTTGATGATGCTGATAACATATGTGGG
genomic: GGATCATACGTTTCTCAAAAGTTGTATCTGCTCGCTTCTGGGAGGATCTGgtgagtttta ... ttttcttcagCTTCTTGCGTTGGTAGGCGACCAGCTTGATGATGCTGATAACATATGTGGG
EST: gi|116398425|gb|EG441017.1|EG441017
EST:     GGATCATACGTTTCTCAAAAGTTGTATCTGCTCGCTTCTGGGAGGATCTG                         CTTCTTGCGTTGGTAGGCGACCAGCTTGATGATGCTGATAACATATGTGGG
genomic: GGATCATACGTTTCTCAAAAGTTGTATCTGCTCGCTTCTGGGAGGATCTGgtgagtttta ... ttttcttcagCTTCTTGCGTTGGTAGGCGACCAGCTTGATGATGCTGATAACATATGTGGG
EST: gi|116398424|gb|EG441016.1|EG441016
EST:     GGATCATACGTTTCTCAAAAGTTGTATCTGCTCGCTTCTGGGAGGATCTG                         CTTCTTGCGTTGGTAGGCGACCAGCTTGATGATGCTGATAACATATGTGGG
genomic: GGATCATACGTTTCTCAAAAGTTGTATCTGCTCGCTTCTGGGAGGATCTGgtgagtttta ... ttttcttcagCTTCTTGCGTTGGTAGGCGACCAGCTTGATGATGCTGATAACATATGTGGG
EST: gi|125027542|gb|EL099811.1|EL099811
EST:     TGGGAGGATCTG                         CTTCTTGCGTTGGTAGGCGACCAGCTTGATGATGCTGATAACATATGTGGG
genomic: TGGGAGGATCTGgtgagtttta ... ttttcttcagCTTCTTGCGTTGGTAGGCGACCAGCTTGATGATGCTGATAACATATGTGGG
EST: gi|116398423|gb|EG441015.1|EG441015
EST:     GGATCATACGTTTCTCAAAAGTTGTATCTGCTCGCTTCTGGGAGGATCTG                         CTTCTTGCGTTGGTAGGCGACCAGCTTGATGATGCTGATAACATATGTGGG
genomic: GGATCATACGTTTCTCAAAAGTTGTATCTGCTCGCTTCTGGGAGGATCTGgtgagtttta ... ttttcttcagCTTCTTGCGTTGGTAGGCGACCAGCTTGATGATGCTGATAACATATGTGGG
EST: gi|125271892|gb|EL285977.1|EL285977
EST:     GGATCATACGTTTCTCAAAAGTTGTATCTGCTCGCTTCTGGGAGGATCTG                         CTTCTTGCGTTGGTAGGCGACCAGCTTGAT
genomic: GGATCATACGTTTCTCAAAAGTTGTATCTGCTCGCTTCTGGGAGGATCTGgtgagtttta ... ttttcttcagCTTCTTGCGTTGGTAGGCGACCAGCTTGAT
EST: gi|164152332|gb|ES101068.1|ES101068
EST:     TGGGAGGATCTG                         CTTCTTGCGTTGGTAGGCGACCAGCTTGATGATGCTGATAACATATGTGGG
genomic: TGGGAGGATCTGgtgagtttta ... ttttcttcagCTTCTTGCGTTGGTAGGCGACCAGCTTGATGATGCTGATAACATATGTGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacttagggtctgagaatcatgttaaatactcttccgtttatttgttttcttcagCTTCTTGCGTTGGTAGGCGACCAGCTTGATGATGCTGATAACATATGTGGGGCAGTACTGAGTGTCCGTTTCAACGAGGACATCATTAGTGTATGGAATC
                             ctcttccgtttatttg  CT-rich tract
                                     tttatttgttttctt  TA-rich tract