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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcagaattgaaaaacagaccttgtggttaaatggtttatgttctcagtgatggcttttgatgctaaagacatcatttttaatttcagGTTACCGTCTTTCGTCAACAGCTTGAACTTGCAAAGGAATTGAAGAAACCTGCGTCAGTTCATTGTGTTCGTGCATTTGGGGATCTACTCGAGATATTAA

Basic information

species Arabidopsis thaliana
transcript AT5G17570.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G17570.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G114131_T02 (Zea mays), 3'ss of exon 3
----------------------------------------------------------------------------------------------gtttcaga-attgaaaaacagacc--------ttgtggttaaatggtttatgttc-tcagtgatggcttttgatgc-taaagacatcat-ttttaatttcagGTTACCGTCTTTCGTCAACAGCTTGAACTTGCAAAGGAATTGAAGAAACCTGCGTCAGTTCATTGTGTTCGTGCATTTGGGGATCTACTCGAGATATTAA
                                                                                              ||||||   ||| |    | |           ||||   ||||||     | ||  |   | ||  |  | | | | |||  ||| ||   | | ||  ||||||   || || |  | |||||| ||||| || ||||||||| ||| |||||  || ||||||||||| || |||||||| ||||| || ||  |||| |
gttagtacttagcaatagcatgaaccctgtacttcatgttgcatgcttgtgtatcggttttgttagaaatttcagttgcatggtgaatattgctgtttcatctattaatggtctggttctagttgtttgtatctaaatgtacccttttgattttttatatccataggtccataacaacagcaaactcttatcacagGTTGAAGTGTTCCAGCGACAGCTCGAACTAGCTAAGGAATTGGAGAGACCTGTTTCTGTTCATTGTGTGCGGGCATTTGGTGATCTTCTGGAAGTATTGA

upper sequence: AT5G17570.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA16G26700.4 (Glycine max), 3'ss of exon 3
-----------------gtttcagaattgaaaaacagaccttgtggttaaatggtttatgttctcagtgatggcttttgatgctaaagacatcatttttaatttcagGTTACCGTCTTTCGTCAACAGCTTGAACTTGCAAAGGAATTGAAGAAACCTGCGTCAGTTCATTGTGTTCGTGCATTTGGGGATCTACTCGAGATATTAA
                  | |||       || |  |||| | |    | | |  |  |      | || |||||  | || |   ||    ||||| |     ||| ||   || ||  | || ||||||||||||||||| || || || ||||| || || ||||||||||||||||| ||||| ||||| || ||| || | |
acacattgaccaatcatatatcaaggacagaagat-gaccatttatgcagaagaatgctacctagattgttggctgctaatacattagga--catttgtg----cagATTGAAGTATTGAGGCAGCAGCTTGAACTTGCAAAAGAGTTAAACAAACCAGCATCTGTTCATTGTGTTCGTGCTTTTGGTGATCTTCTTGAGCTAATGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtttatgttctcagtgatggcttttgatgctaaagacatcatttttaatttcagGTTACCGTCTTTCGTCAACAGCTTGAACTTGCAAAGGAATTGAAGAAACCTGCGTCAGTTCATTGTGTTCGTGCATTTGGGGATCTACTCGAGATATTAA
                                       tcattttt  CT-rich tract
                               taaagacatcattttt  TA-rich tract