1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtcagccttgctctgtcttatcttacttcctcatttcattacatgagttaagagttgcattcagtccattgcaataaaccttataaaactttggtctaatgtttatttatgttgcagCCATTTCGAGACATGATCGAAGGAATGAGAATGGACTTGAAGAAATCGAGATACCAGAACTTCGATGATCTATACCTTTACTGCTACTACGTCGCTGGAA
species | Arabidopsis thaliana |
transcript | AT5G17230.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAGATACCCGGTCGATATTCAG CCATTTCGAGACATGATCGAAGGAATGAGAATGGEST: gi|124725090|gb|EH816492.1|EH816492
genomic: TAGATACCCGGTCGATATTCAGgtcagccttg ... tatgttgcagCCATTTCGAGACATGATCGAAGGAATGAGAATGG
EST: TTGATGCTGCTCTCGCTGATACAGTTGCTAGATACCCGGTCGATATTCAG CCATTTCGAGACATGATCGAAGGAATGAGAAEST: gi|116476476|gb|EG519068.1|EG519068
genomic: TTGATGCTGCTCTCGCTGATACAGTTGCTAGATACCCGGTCGATATTCAGgtcagccttg ... tatgttgcagCCATTTCGAGACATGATCGAAGGAATGAGAA
EST: TTGATGCTGCTCTCGCTGATACAGTTGCTAGATACCCGGTCGATATTCAG CCATTTCGAGACATGATCGAAGGAATGAGAATGGACTTGAAGAAATCGAGA
genomic: TTGATGCTGCTCTCGCTGATACAGTTGCTAGATACCCGGTCGATATTCAGgtcagccttg ... tatgttgcagCCATTTCGAGACATGATCGAAGGAATGAGAATGGACTTGAAGAAATCGAGA
agtccattgcaataaaccttataaaactttggtctaatgtttatttatgttgcagCCATTTCGAGACATGATCGAAGGAATGAGAATGGACTTGAAGAAATCGAGATACCAGAACTTCGATGATCTATACCTTTACTGCTACTACGTCGCTGGAA
gtctaat putative branch site (score: 3)
tttattt CT-rich tract
taatgtttatttatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagccttgctctgtcttatcttacttcctcatttcattacatgagttaagagttgcattcagtccattgcaataaaccttataaaactttggtctaatgtttatttatgttgcagCCATTTCGAGACATGATCGAAGGAATGAGAATGGACTTGAAGAAATCGAGATACCAGAACTTCGATGATCTATACCTTTACTGCTACTACGTCGCTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA