1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agaagccttagaataggttaataaatttttcgaagttggttatgtccctggatgcagggagatgcttgctattcgctaactttttatattctcattccagGCAAGAAGTGGTGTTTTTAGATAACGAGATAACATTCAATGAAGCAATTATTGAGGAAAGAGAGCAAGGGATTCGAGAAATTGAAGACCAGATTCGTGAT
species | Arabidopsis thaliana |
transcript | AT5G16830.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAATCTTTAAGGATCTCCCAGCAGCAAGCTCTTCTTCTACAATCAAGAAG GCAAGAAGTGGTGTTTTTAGATAACGAGEST: gi|124850495|gb|EH934932.1|EH934932
genomic: GAATCTTTAAGGATCTCCCAGCAGCAAGCTCTTCTTCTACAATCAAGAAGgtgaggagtg ... ctcattccagGCAAGAAGTGGTGTTTTTAGATAACGAG
EST: CAATCAAGAAG GCAAGAAGTGGTGTTTTTAGATAACGAGATAACATTCAATGAAGCAATTATEST: gi|86075590|gb|DR371347.1|DR371347
genomic: CAATCAAGAAGgtgaggagtg ... ctcattccagGCAAGAAGTGGTGTTTTTAGATAACGAGATAACATTCAATGAAGCAATTAT
EST: AGCTCTTCTTCTACAATCAAGAAG GCAAGAAGTGGTGTTTYTAGATAACGAGATWACATTCAATGAAGCAATTAT
genomic: AGCTCTTCTTCTACAATCAAGAAGgtgaggagtg ... ctcattccagGCAAGAAGTGGTGTTTTTAGATAACGAGATAACATTCAATGAAGCAATTAT
ccctggatgcagggagatgcttgctattcgctaactttttatattctcattccagGCAAGAAGTGGTGTTTTTAGATAACGAGATAACATTCAATGAAGCAATTATTGAGGAAAGAGAGCAAGGGATTCGAGAAATTGAAGACCAGATTCGTGAT
cgctaac putative branch site (score: 2)
ctttttatattctc CT-rich tract
taactttttatattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaagccttagaataggttaataaatttttcgaagttggttatgtccctggatgcagggagatgcttgctattcgctaactttttatattctcattccagGCAAGAAGTGGTGTTTTTAGATAACGAGATAACATTCAATGAAGCAATTATTGAGGAAAGAGAGCAAGGGATTCGAGAAATTGAAGACCAGATTCGTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - -aataaat