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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatacatttcaactttctaatctcaccactgctttgtaaaattttgcctctctcatgagttctgtttgcagAACGAAGATGATTGCTCTTACTTTTTGAGAATTGGACAATGTAAATTTGGGGGAACTTGTAAATTCAATCACCCTCAGACTCAATCAACCAACTTGATGG

Basic information

species Arabidopsis thaliana
transcript AT5G16540.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125016506|gb|EL088775.1|EL088775
EST:     TATTGATGGAAGTGTATCAGTTAATGTCTTAAGCTATCCTCTACGTCCG                         AACGAAGATGATTGCTCTTACTTTTTGAGAATTGGACAATGTAAATTTGGG
genomic: TATTGATGGAAGTGTATCAGTTAATGTCTTAAGCTATCCTCTACGTCCGgtatgtatac ... ctgtttgcagAACGAAGATGATTGCTCTTACTTTTTGAGAATTGGACAATGTAAATTTGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaatctcaccactgctttgtaaaattttgcctctctcatgagttctgtttgcagAACGAAGATGATTGCTCTTACTTTTTGAGAATTGGACAATGTAAATTTGGGGGAACTTGTAAATTCAATCACCCTCAGACTCAATCAACCAACTTGATGG
                                           ttctgttt  CT-rich tract
 tttgtaaaatttt  TA-rich tract