1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gttagttatttatgtagaaaatgaattcttcaatgttataatttgcaaaagtgtcgaccatgcttaccacggtatgttgttattgtagCCTCTGCTAGTACTGAGGATGAATTTGAGAAATGGCAGAGAGAGATTAAAGACGCAGAAGCAGAGGCTGAAAGGTTGAAAAATGGTTCTGTCTCTGGTAC
species | Arabidopsis thaliana |
transcript | AT5G16260.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAAGATTATACTG CCTCTGCTAGTACTGAGGATGAATTTGAGAAATGGCAGAGAGAGATTAAAGEST: gi|19876852|gb|AU237683.1|AU237683
genomic: CAAGATTATACTGgttagttatt ... gttattgtagCCTCTGCTAGTACTGAGGATGAATTTGAGAAATGGCAGAGAGAGATTAAAG
EST: GATAAATGGATCTAATGCTGGAACCAGGCAAGAGAAGCAAGATTATACTG CCTCTGCTAGTACTGAGGATGAATTTGAGAAATGGCAGAGAGAGATTAAAG
genomic: GATAAATGGATCTAATGCTGGAACCAGGCAAGAGAAGCAAGATTATACTGgttagttatt ... gttattgtagCCTCTGCTAGTACTGAGGATGAATTTGAGAAATGGCAGAGAGAGATTAAAG
tgttataatttgcaaaagtgtcgaccatgcttaccacggtatgttgttattgtagCCTCTGCTAGTACTGAGGATGAATTTGAGAAATGGCAGAGAGAGATTAAAGACGCAGAAGCAGAGGCTGAAAGGTTGAAAAATGGTTCTGTCTCTGGTAC
tgcttac putative branch site (score: 2)
ttgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttatttatgtagaaaatgaattcttcaatgttataatttgcaaaagtgtcgaccatgcttaccacggtatgttgttattgtagCCTCTGCTAGTACTGAGGATGAATTTGAGAAATGGCAGAGAGAGATTAAAGACGCAGAAGCAGAGGCTGAAAGGTTGAAAAATGGTTCTGTCTCTGGTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC