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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtctctctaaacttcatcgtgattctttgtttctcttctgcttgcaataactttttcccccataattcttcaatcagGGATGAAGCGGATTGGAGATAAAGAAATCGACGGTTCTGGGTCTCAAAATCAACATCCAGTGGGCTCCCCTCGAAACGAATT

Basic information

species Arabidopsis thaliana
transcript AT5G15030.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125225265|gb|EL239350.1|EL239350
EST:     TTGCTCTCACTTGAAAGATCTGAGTGATTTGTTTCAGATCTTCTCCGAAA                         GGATGAAGCGGATTG
genomic: TTGCTCTCACTTGAAAGATCTGAGTGATTTGTTTCAGATCTTCTCCGAAAgtgagtctct ... cttcaatcagGGATGAAGCGGATTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctttgtttctcttctgcttgcaataactttttcccccataattcttcaatcagGGATGAAGCGGATTGGAGATAAAGAAATCGACGGTTCTGGGTCTCAAAATCAACATCCAGTGGGCTCCCCTCGAAACGAATT
                      caataac  putative branch site (score: 2)
                            ctttttcccccataat  CT-rich tract
                       aataacttttt  TA-rich tract