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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtttacttgatgattagcttgaagccttgaagagatgtgaatggtaaggtcacataacttgacatgtttgtttgcagGCCGATGATATTAGTGGATTCCACGCTAATACACATATTCCCATCGTCGTTGGATCCCAACAACGGTATGAAATCACTGGTGATCTACTCCATAAG

Basic information

species Arabidopsis thaliana
transcript AT5G12950.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124704924|gb|EH796326.1|EH796326
EST:     CTCGCAATTCAG                         GCCGATGATATTAGTGGATTCCACGCTAATACACATATTCCCATCGTCGTT
genomic: CTCGCAATTCAGgtagtttact ... ttgtttgcagGCCGATGATATTAGTGGATTCCACGCTAATACACATATTCCCATCGTCGTT
EST: gi|124703861|gb|EH795263.1|EH795263
EST:     CTCGCAATTCAG                         GCCGATGATATTAGTGGATTCCACGCTAATACACATATTCCCATCGTCGTT
genomic: CTCGCAATTCAGgtagtttact ... ttgtttgcagGCCGATGATATTAGTGGATTCCACGCTAATACACATATTCCCATCGTCGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agccttgaagagatgtgaatggtaaggtcacataacttgacatgtttgtttgcagGCCGATGATATTAGTGGATTCCACGCTAATACACATATTCCCATCGTCGTTGGATCCCAACAACGGTATGAAATCACTGGTGATCTACTCCATAAG
                                            tttgttt  CT-rich tract
                               ataactt  TA-rich tract