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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtaaaaaaatcatgagcaaagcttttttaaaacaatttgttgtagatgcagcaggactctaatttacattccattttcttcaatgttttccagCTGATGCTTATAACCATACAGACTCCGAACTTCTCAAGTCAGAAAATAGTCACAATAGAGACGCTGGTTCTACTGCGTCTACAGCTATTCTTGTTGGTGA

Basic information

species Arabidopsis thaliana
transcript AT5G10740.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116449506|gb|EG492098.1|EG492098
EST:     TAATCTGATCACCCACCCAAAGTTTATCTCTGACACCAAATCAGCTATAA                         CTGATGCTTATAACCATACAGACTCCGAACTTCTCAAGTCAGAAAATAGTC
genomic: TAATCTGATCACCCACCCAAAGTTTATCTCTGACACCAAATCAGCTATAAgtactgtaaa ... tgttttccagCTGATGCTTATAACCATACAGACTCCGAACTTCTCAAGTCAGAAAATAGTC
EST: gi|19877556|gb|AU238387.1|AU238387
EST:     TAATCTGATCACCCACCCAAAGTTTATCTCTGACACCAAATCAGCTATAA                         CTGATGCTTATAACCATACAGACTCCGAACTTCTCAAGTCAGAAAATAGTC
genomic: TAATCTGATCACCCACCCAAAGTTTATCTCTGACACCAAATCAGCTATAAgtactgtaaa ... tgttttccagCTGATGCTTATAACCATACAGACTCCGAACTTCTCAAGTCAGAAAATAGTC
EST: gi|125187608|gb|EL202562.1|EL202562
EST:     TCTGACACCAAATCAGCTATAA                         CTGATGCTTATAACCATACAGACTCCGAACTTCTCAAGTCAGAAAATAGTC
genomic: TCTGACACCAAATCAGCTATAAgtactgtaaa ... tgttttccagCTGATGCTTATAACCATACAGACTCCGAACTTCTCAAGTCAGAAAATAGTC
EST: gi|125241646|gb|EL255731.1|EL255731
EST:     ACACCAAATCAGCTATAA                         CTGATGCTTATAACCATACAGACTCCGAACTTCTCAAGTCAGAAAATAGTC
genomic: ACACCAAATCAGCTATAAgtactgtaaa ... tgttttccagCTGATGCTTATAACCATACAGACTCCGAACTTCTCAAGTCAGAAAATAGTC
EST: gi|116449507|gb|EG492099.1|EG492099
EST:     TAATCTGATCACCCACCCAAAGTTTATCTCTGACACCAAATCAGCTATAA                         CTGATGCTTATAACCATACAGACTCCGAACTTCTCAAGTCAGAAAATAGTC
genomic: TAATCTGATCACCCACCCAAAGTTTATCTCTGACACCAAATCAGCTATAAgtactgtaaa ... tgttttccagCTGATGCTTATAACCATACAGACTCCGAACTTCTCAAGTCAGAAAATAGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgtagatgcagcaggactctaatttacattccattttcttcaatgttttccagCTGATGCTTATAACCATACAGACTCCGAACTTCTCAAGTCAGAAAATAGTCACAATAGAGACGCTGGTTCTACTGCGTCTACAGCTATTCTTGTTGGTGA
                  ctctaat  putative branch site (score: 3)
                                             tgttttcc  putative PPT
                     taatttacatt  TA-rich tract