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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaacacttgacgagaatgagacatggaagctttttctatttagctatccaacttgatatttccatttgacagGCAAGTGTCGATTGAGGAAGGTGATAACAAAGCTCGTGATTATGGAGTAATATTCATTGAGACCAGTGCAAAAGCAGGATTTAACATCAAG

Basic information

species Arabidopsis thaliana
transcript AT5G10260.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G10260.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv00s0665g00040.t01 (Vitis vinifera), 3'ss of exon 4
gtaagaaacact--tgacgagaatgagacatggaagctttttctatttagctatccaactt---------------gatatttcc------atttgacagGCAAGTGTCGATTGAGGAAGGTGATAACAAAGCTCGTGATTATGGAGTAATATTCATTGAGACCAGTGCAAAAGCAGGATTTAACATCAAG
 |||  || | |  || | |     ||   ||||   ||    |||||   | || |  ||                || |||        ||   ||||||||||||| || ||||||||||||| |||| ||||||||| |||||| || ||||| || |||||||| ||||||||||| || ||||||
ataactaatattgatggccaaccatagttttggatttttcccttatttttgtttctattttcagaaaaattcagataatgtttttttggtaatcaaacagGCAAGTGTCAATAGAGGAAGGTGATACCAAATCTCGTGATTTTGGAGTCATGTTCATAGAAACCAGTGCTAAAGCAGGATTCAATATCAAG

upper sequence: AT5G10260.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: PP1S39_147V6.1 (Physcomitrella patens), 3'ss of exon 6
----------------------------------------------------------------------------------------------------------gtaagaaacacttgacgag--aatgagacatg---gaagctttttctatttagctatccaacttgatatt-tccatttgacagGCAAGTGTCGATTGAGGAAGGTGATAACAAAGCTCGTGATTATGGAGTAATATTCATTGAGACCAGTGCAAAAGCAGGATTTAACATCAAG
                                                                                                           |    |    || || |    |||   | ||   ||||| || |  ||      ||   |  |  | || ||  |||  ||| |||||||| ||||| ||||||||    ||||||   || | |||||| || ||||||||||| ||| |||||||||| ||||||||||||
gtgaggaaactatggtacaagctaatactggctgttttctgagtagacgttattctatatcttgacgtaatagccaccagaacagagttcgtagactcgcacgctcttctttattttttcacaacttgatgtatcctgcgggaagccttgtggatgagaagattgcatgtctttttgtctgttt--cagTCAAGTGTCTATTGAAGAAGGTGACGCTAAAGCTAAGGAATTTGGAGTCATGTTCATTGAGACAAGTTCAAAAGCAGGTTTTAACATCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagacatggaagctttttctatttagctatccaacttgatatttccatttgacagGCAAGTGTCGATTGAGGAAGGTGATAACAAAGCTCGTGATTATGGAGTAATATTCATTGAGACCAGTGCAAAAGCAGGATTTAACATCAAG
                                 acttgat  putative branch site (score: 5)
                                         tttccattt  CT-rich tract
             tttttctattta  TA-rich tract