Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagttagtttctttatgctctactagtcttttgatactattatgtggttatttagtgtcataatcttttgatctgcagAAGTTGATGTGTGGGAGATTGCTCCCCGTTTCTCGGATTTGCTTACAAACACGGGGATCCAATTTCTCCGAGATAGAGTGAAAACATTGCTTCCTTGTGA

Basic information

species Arabidopsis thaliana
transcript AT5G08740.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19878101|gb|AU238932.1|AU238932
EST:     ATCCGAACGTTTTGTGTTCAAGCCCATGTTGTATGAACTACTCTCTGGAG                         AAGTTGATGTGTGGGAGATTGCTCCCCGTTTCTCGGATTTGCTTACAAACA
genomic: ATCCGAACGTTTTGTGTTCAAGCCCATGTTGTATGAACTACTCTCTGGAGgtaaagttag ... tgatctgcagAAGTTGATGTGTGGGAGATTGCTCCCCGTTTCTCGGATTTGCTTACAAACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtcttttgatactattatgtggttatttagtgtcataatcttttgatctgcagAAGTTGATGTGTGGGAGATTGCTCCCCGTTTCTCGGATTTGCTTACAAACACGGGGATCCAATTTCTCCGAGATAGAGTGAAAACATTGCTTCCTTGTGA
                                          ttttgat  putative branch site (score: 4)
                                        tctttt  CT-rich tract
     ttttgatactattat  TA-rich tract