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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataagaaatttcttccgtctctacaggtgttttaatttgaagttaattatgagcaaatcttgcacttcccttaaactgcgcttctaagatggctgcagataccgtgacctatatctatatattgttgaataatcacatatttgaacactctcagATCCTTGTGGCTACACCTGGAAGGCTCAAAGACCATATTGAAAACACTTCTGGATTCGCAACAAGATTGATGGGTGTGAAAGTCCTTGTGCTTGACGAAG

Basic information

species Arabidopsis thaliana
transcript AT5G08610.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G08610.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: LOC_Os01g43120.1 (Oryza sativa), 3'ss of exon 4
gtaataagaaatttcttccgtctctacaggtgttttaatttgaagttaattatgagcaaatcttgcacttcccttaaactgcgcttctaagatggctgcagataccgtgacctatatctatatattgttgaataatcacatatttgaacactctcagATCCTTGTGGCTACACCTGGAAGGCTCAAAGACCATATTGAAAACACTTCTGGATTCGCAACAAGATTGATGGGTGTGAAAGTCCTTGTGCTTGACGAAG
                                                                |   | ||| | |||| |       |||  | | || ||   |    ||   |  |  |  |||  | |||     |      |  |   ||||| ||||| ||||||||||||||||| ||||||||| |||| |||||  |||| ||  | ||  || | |  |||||||| || ||||| ||||| ||||
----------------------------------------------------------------gttgtacccatgaactac-------agacaggt-catatcttggattcttagtgcaagttatgtatactaacactgtgcactgat-caaacagATTCTTGTTGCTACACCTGGAAGGCTTAAAGACCATGTTGAGAACACACCTGGTTTTTCTACCCGACTAAAAGGTGTGAAGGTTCTTGTTCTTGATGAAG

upper sequence: AT5G08610.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: LOC_Os06g33520.1 (Oryza sativa), 3'ss of exon 4
gtaataagaaatttcttccgtctctacaggtgttttaatttgaagttaattatgagcaaatcttgcacttcccttaaactgcgcttctaagatggctgcagataccgtgacctatatctatatattgttgaataatcacatatttgaacactctcagATCCTTGTGGCTACACCTGGAAGGCTCAAAGACCATATTGAAAACACTTCTGGATTCGCAACAAGATTGATGGGTGTGAAAGTCCTTGTGCTTGACGAAG
                                                                     |   |  || |    | || |  |  |    ||||       ||| || |  ||  |||    |||  |      |||       ||||| || || |||||||| |||||||| || || ||||| || |||||| | || || || || |||||||||||||| ||||||||| | ||||| ||||
--------------------------------------------------------------------gtgattggaagtaacttactgaattatcc-tggatatt----tctacatttggattgtgtgatgtaaaaatgctgctga---tgtgcagATTCTAGTAGCTACACCAGGAAGGCTTAAGGATCATATGGAGAACACTCCAGGGTTTGCTACTAGATTGATGGGTGTCAAAGTCCTTATTCTTGATGAAG

upper sequence: AT5G08610.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA16G02880.1 (Glycine max), 3'ss of exon 4
gtaataagaaatttcttccgtctctacaggtgttttaatttgaagttaattatgagcaaatcttgcacttcccttaaactgcgcttctaagatggctgcagataccgtgacctatatctatatattgttgaataatcacatatttgaacactct-cagATCCTTGTGGCTACACCTGGAAGGCTCAAAGACCATATTGAAAACACTTCTGGATTCGCAACAAGATTGATGGGTGTGAAAGTCCTTGTGCTTGACGAAG
                                              ||| ||  | | | | || ||       |  | ||    |  |     |||  || |||  ||  || |    |   ||| || |           |||| | ||| | ||||||||||| ||||| ||||||||||| | ||| |||| ||| || ||| |||| || ||||| ||  ||||||||||||| ||| | |||||||| ||||
----------------------------------------------taactactaactagtttttcagactttgttgattgaatattgagttctgcttaagctac-atgttctgttgacacccatttttaa-----------tttgcatactgtacagATCCTTGTTGCTACTCCTGGAAGGCTAAGAGATCATACTGAGAATACTGCTGGTTTTGCAACTAGGCTGATGGGTGTGAAGGTCTTGGTGCTTGATGAAG

upper sequence: AT5G08610.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA07G06240.1 (Glycine max), 3'ss of exon 4
gtaataagaaatttcttccgtctctacaggtgttttaatttgaagttaattatgagcaaatcttgcacttcccttaaactgcgcttctaagatggctgcagataccgtgacctatatctatatattgttgaataatcacatatttgaacactct-cagATCCTTGTGGCTACACCTGGAAGGCTCAAAGACCATATTGAAAACACTTCTGGATTCGCAACAAGATTGATGGGTGTGAAAGTCCTTGTGCTTGACGAAG
                                              ||| ||    | | | || ||       |    ||    |  |     |||  || |||  ||  || |    | | |||||| |           |||| | ||| | ||||||||||| || |||||||||||||| | ||| |||| ||| || ||| |||| || ||||| ||  ||||||||||||| ||| | |||||||| ||||
----------------------------------------------taactacttactagttttccagactttgttggttgattattgacttctgcttaagctac-atgttctgttcacacacattgttaa-----------tttgcatactatacagATCCTTGTTGCCACACCTGGAAGGCTTAGAGATCATACTGAGAATACTGCTGGTTTTGCAACTAGGCTGATGGGTGTGAAGGTCTTGGTGCTTGATGAAG

upper sequence: AT5G08610.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv15s0046g01010.t01 (Vitis vinifera), 3'ss of exon 5
gtaataagaaatttcttccgtctctacaggtgttttaatttgaagttaattatgagcaaatcttgcacttcccttaaactgcgcttcta--agatggctgcagataccgtgacctatatctatatattgttgaataatcacatatttgaacactctcagATCCTTGTGGCTACACCTGGAAGGCTCAAAGACCATATTGAAAACACTTCTGGATTCGCAACAAGATTGATGGGTGTGAAAGTCCTTGTGCTTGACGAAG
                                                           ||  |   |   |   ||||  |  |   |  | ||   |    ||   |  |    ||  |    | | ||  ||         ||   | | |  ||||| ||||| ||||| |||||| |||| || ||||||||||| || ||  | ||||| |||||  |  |||||||||| ||||||||||| ||||| ||||
-----------------------------------------------------------atgctctgcaatctgaaaacctcaataaaagcaaattaattttcatcttgaaattgttaattgggaaatattttatttgtgggccttgtgatatttacagATTCTTGTAGCTACCCCTGGACGGCTAAAGGACCATATTGAGAATACAGCAGGATTTGCAACTCGTCTGATGGGTGTCAAAGTCCTTGTACTTGATGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taccgtgacctatatctatatattgttgaataatcacatatttgaacactctcagATCCTTGTGGCTACACCTGGAAGGCTCAAAGACCATATTGAAAACACTTCTGGATTCGCAACAAGATTGATGGGTGTGAAAGTCCTTGTGCTTGACGAAG
                                              cactctc  CT-rich tract
                tatatattgttgaata  TA-rich tract