1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaacatatttacttctcttagaaacctaagaagggattaataagcaaatccttagctctgttttcgtattgactgttcgtctttttcacatgtatgtggcggaaatccgctggcagTTCATATGCCAACAAGCACGGGTGCAGTACGTTCCACCCAAACGTATTTGAAACCTTTTGCAGGTTGCAGCAAGTGTCTCCATATTAGCATCTCTGCAAG
species | Arabidopsis thaliana |
transcript | AT5G08565.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGGTTGCTACACTCTTGCTGTCTCAGAGGCACTCCCAGAGGAAATGCAG TTCATATGCCAACAAGCACGGGTGCAGTACGTTCCACCCAAACGTATTTGAEST: gi|86085973|gb|DR381732.1|DR381732
genomic: CTGGTTGCTACACTCTTGCTGTCTCAGAGGCACTCCCAGAGGAAATGCAGgtaaacatat ... ccgctggcagTTCATATGCCAACAAGCACGGGTGCAGTACGTTCCACCCAAACGTATTTGA
EST: CTGGTTGCTACACTCTTGCTGTCTCAGAGACACTCCCAGAGGAAATGCAG TTCATATGCCAACAAGCACGGGTGCAGTACGTTCCACCCAAACGTATTTGA
genomic: CTGGTTGCTACACTCTTGCTGTCTCAGAGGCACTCCCAGAGGAAATGCAGgtaaacatat ... ccgctggcagTTCATATGCCAACAAGCACGGGTGCAGTACGTTCCACCCAAACGTATTTGA
tttcgtattgactgttcgtctttttcacatgtatgtggcggaaatccgctggcagTTCATATGCCAACAAGCACGGGTGCAGTACGTTCCACCCAAACGTATTTGAAACCTTTTGCAGGTTGCAGCAAGTGTCTCCATATTAGCATCTCTGCAAG
tattgac putative branch site (score: 2)
tcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacatatttacttctcttagaaacctaagaagggattaataagcaaatccttagctctgttttcgtattgactgttcgtctttttcacatgtatgtggcggaaatccgctggcagTTCATATGCCAACAAGCACGGGTGCAGTACGTTCCACCCAAACGTATTTGAAACCTTTTGCAGGTTGCAGCAAGTGTCTCCATATTAGCATCTCTGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG