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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaccattatcagctaatctcagatctcaagctttattgtgtatatgatataagacagaaatgttgagagatttggatgatatgtgacagGGTTTTGGGAATGTTGGAACATGGGCTGCGAAGCTGATCCACGAGAAAGGCGGTAAAGTGGTTGCAGTAAGCGACATTACTGGTGCAATCAGGAACCCTG

Basic information

species Arabidopsis thaliana
transcript AT5G07440.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125262661|gb|EL276746.1|EL276746
EST:     TTTGTTATTCAA                         GGTTTTGGGAATGTTGGAACATGGGCTGCGAAGCTGATCCACGAGAAAGGC
genomic: TTTGTTATTCAAgtaaaaccat ... tatgtgacagGGTTTTGGGAATGTTGGAACATGGGCTGCGAAGCTGATCCACGAGAAAGGC
EST: gi|116477118|gb|EG519710.1|EG519710
EST:     TTCTTGCTGAGTACGGGAAATCGATTCAGGGTTTGACATTTGTTATTCAA                         GGTTTTGGGAATGTTGGAACATGGGCTGCGAAGCTGATCCACGAGAAAGGC
genomic: TTCTTGCTGAGTACGGGAAATCGATTCAGGGTTTGACATTTGTTATTCAAgtaaaaccat ... tatgtgacagGGTTTTGGGAATGTTGGAACATGGGCTGCGAAGCTGATCCACGAGAAAGGC
EST: gi|116402429|gb|EG445021.1|EG445021
EST:     TTCTTGCTGAGTACGGGAAATCGATTCAGGGTTTGACATTTGTTATTCAA                         GGTTTTGGGAATGTTGGAACATGGGCTGCGAAGCTGATCCACGAGAAAGGC
genomic: TTCTTGCTGAGTACGGGAAATCGATTCAGGGTTTGACATTTGTTATTCAAgtaaaaccat ... tatgtgacagGGTTTTGGGAATGTTGGAACATGGGCTGCGAAGCTGATCCACGAGAAAGGC
EST: gi|116402756|gb|EG445348.1|EG445348
EST:     TTCTTGCTGAGTACGGGAAATCGATTCAGGGTTTGACATTTGTTATTCAA                         GGTTTTGGGAATGTTGGAACATGGGCTGCGAAGCTGATCCACGAGAAAGGC
genomic: TTCTTGCTGAGTACGGGAAATCGATTCAGGGTTTGACATTTGTTATTCAAgtaaaaccat ... tatgtgacagGGTTTTGGGAATGTTGGAACATGGGCTGCGAAGCTGATCCACGAGAAAGGC
EST: gi|124889006|gb|EH967908.1|EH967908
EST:     AGTACGGGAAATCGATTCAGGGTTTGACATTTGTTATTCAA                         GGTTTTGGGAATGTTGGAACATGGGCTGCGAAGCTGATCCACGAGAAAGGC
genomic: AGTACGGGAAATCGATTCAGGGTTTGACATTTGTTATTCAAgtaaaaccat ... tatgtgacagGGTTTTGGGAATGTTGGAACATGGGCTGCGAAGCTGATCCACGAGAAAGGC
EST: gi|116401885|gb|EG444477.1|EG444477
EST:     TTCTTGCTGAGTACGGGAAATCGATTCAGGGTTTGACATTTGTTATTCAA                         GGTTTTGGGAATGTTGGAACATGGGCTGCGAAGCTGATCCACGAGAAAGGC
genomic: TTCTTGCTGAGTACGGGAAATCGATTCAGGGTTTGACATTTGTTATTCAAgtaaaaccat ... tatgtgacagGGTTTTGGGAATGTTGGAACATGGGCTGCGAAGCTGATCCACGAGAAAGGC
EST: gi|116403318|gb|EG445910.1|EG445910
EST:     TTCTTGCTGAGTACGGGAAATCGATTCAGGGTTTGACATTTGTTATTCAA                         GGTTTTGGGAATGTTGGAACATGGGCTGCGAAGCTGATCCACGAGAAAGGC
genomic: TTCTTGCTGAGTACGGGAAATCGATTCAGGGTTTGACATTTGTTATTCAAgtaaaaccat ... tatgtgacagGGTTTTGGGAATGTTGGAACATGGGCTGCGAAGCTGATCCACGAGAAAGGC
EST: gi|116401898|gb|EG444490.1|EG444490
EST:     TTCTTGCTGAGTACGGGAAATCGATTCAGGGTTTGACATTTGTTATTCAA                         GGTTTTGGGAATGTTGGAACATGGGCTGCGAAGCTGATCCACGAGAAAGGC
genomic: TTCTTGCTGAGTACGGGAAATCGATTCAGGGTTTGACATTTGTTATTCAAgtaaaaccat ... tatgtgacagGGTTTTGGGAATGTTGGAACATGGGCTGCGAAGCTGATCCACGAGAAAGGC
EST: gi|116401662|gb|EG444254.1|EG444254
EST:     TTCTTGCTGAGTACGGGAAATCGATTCAGGGTTTGACATTTGTTATTCAA                         GGTTTTGGGAATGTTGGAACATGGGCTGCGAAGCTGATCCACGAGAAAGGC
genomic: TTCTTGCTGAGTACGGGAAATCGATTCAGGGTTTGACATTTGTTATTCAAgtaaaaccat ... tatgtgacagGGTTTTGGGAATGTTGGAACATGGGCTGCGAAGCTGATCCACGAGAAAGGC
EST: gi|116416105|gb|EG458697.1|EG458697
EST:     TTCTTGCTGAGTACGGGAAATCGATTCAGGGTTTGACATTTGTTATTCAA                         GGTTTTGGGAATGTTGGAACATGGGCTGCGAAGCTGATCCACGAGAAAGGC
genomic: TTCTTGCTGAGTACGGGAAATCGATTCAGGGTTTGACATTTGTTATTCAAgtaaaaccat ... tatgtgacagGGTTTTGGGAATGTTGGAACATGGGCTGCGAAGCTGATCCACGAGAAAGGC
EST: gi|116400111|gb|EG442703.1|EG442703
EST:     TTCTTGCTGAGTACGGGAAATCGATTCAGGGTTTGACATTTGTTATTCAA                         GGTTTTGGGAATGTTGGAACATGGGCTGCGAAGCTGATCCACGAGAAAGGC
genomic: TTCTTGCTGAGTACGGGAAATCGATTCAGGGTTTGACATTTGTTATTCAAgtaaaaccat ... tatgtgacagGGTTTTGGGAATGTTGGAACATGGGCTGCGAAGCTGATCCACGAGAAAGGC
EST: gi|116402751|gb|EG445343.1|EG445343
EST:     TTCTTGCTGAGTACGGGAAATCGATTCAGGGTTTGACATTTGTTATTCAA                         GGTTTTGGGAATGTTGGAACATGGGCTGCGAAGCTGATCCACGAGAAAGGC
genomic: TTCTTGCTGAGTACGGGAAATCGATTCAGGGTTTGACATTTGTTATTCAAgtaaaaccat ... tatgtgacagGGTTTTGGGAATGTTGGAACATGGGCTGCGAAGCTGATCCACGAGAAAGGC
EST: gi|124715991|gb|EH807393.1|EH807393
EST:     GAGTACGGGAAATCGATTCAGGGTTTGACATTTGTTTTATTCAA                         GGTTTTGGGAATGTTGGAACATGGGCTGCGAAGCTGATCCACGAGAAAGG
genomic: GAGTACGGGAAATCGATTCAGGGTTTGACATTTG--TTATTCAAgtaaaaccat ... tatgtgacagGGTTTTGGGAATGTTGGAACATGGGCTGCGAAGCTGATCCACGAGAAAGG
EST: gi|116445210|gb|EG487802.1|EG487802
EST:     TCTTGCTGAGTACGGGAAATCGATTCAGGGGTTTGACATTTGTTATTCAA                         GGTTTTGGGAATGTTGG
genomic: TCTTGCTGAGTACGGGAAATCGATTCAGGG-TTTGACATTTGTTATTCAAgtaaaaccat ... tatgtgacagGGTTTTGGGAATGTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtgtatatgatataagacagaaatgttgagagatttggatgatatgtgacagGGTTTTGGGAATGTTGGAACATGGGCTGCGAAGCTGATCCACGAGAAAGGCGGTAAAGTGGTTGCAGTAAGCGACATTACTGGTGCAATCAGGAACCCTG
      tatatgatataaga  TA-rich tract