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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatactttagattctgtataaaattggtgaaaccgttgtgtgctatatatatactctagattcaattcttgacatttttatttggttctctgcagGTGGCGGAAATTGCAGCGGGTGCAATGAATGATTATTTGTTGATGGAGCACATGCTTAAAGTCCATGTCATTGAACCAGAGAATGTTAAACCCAATCT

Basic information

species Arabidopsis thaliana
transcript AT5G04600.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86067155|gb|DR362912.1|DR362912
EST:     ACTGGGAAATCAAAGCATTTTGGGTTCATACAGTTTGAGGACCCTGAG                         GTGGCGGAAATTGCAGCGGGTGCAATGAATGATTATTTGTTGATGGAGCAC
genomic: ACTGGGAAATCAAAGCATTTTGGGTTCATACAGTTTGAGGACCCTGAGgtatacttta ... ttctctgcagGTGGCGGAAATTGCAGCGGGTGCAATGAATGATTATTTGTTGATGGAGCAC
EST: gi|86067156|gb|DR362913.1|DR362913
EST:     ACTGGGAAATCAAAGCATTTTGGGTTCATACAGTTTGAGGACCCTGAG                         GTGGCGGAAATTGCAGCGGGTGCAATGAATGATTATTTGTTGATGGAGCAC
genomic: ACTGGGAAATCAAAGCATTTTGGGTTCATACAGTTTGAGGACCCTGAGgtatacttta ... ttctctgcagGTGGCGGAAATTGCAGCGGGTGCAATGAATGATTATTTGTTGATGGAGCAC
EST: gi|86074844|gb|DR370601.1|DR370601
EST:     ACTGGGAAATCAAAGCATTTTGGGTTCATACAGTTTGAGGACCCTGAG                         GTGGCGGAAATTGCAGCGGGTGCAATGAATGATTATTTGTTGATGGWGCAC
genomic: ACTGGGAAATCAAAGCATTTTGGGTTCATACAGTTTGAGGACCCTGAGgtatacttta ... ttctctgcagGTGGCGGAAATTGCAGCGGGTGCAATGAATGATTATTTGTTGATGGAGCAC
EST: gi|86067154|gb|DR362911.1|DR362911
EST:     ACTGGGAAATCAAAGCATTTTGGGTTCATACAGTTTGAGGACCCTGAG                         GTGGCGGAAATTGCAGCGGGTGCAATGAATGATTATTTGTTGATGGAGCAC
genomic: ACTGGGAAATCAAAGCATTTTGGGTTCATACAGTTTGAGGACCCTGAGgtatacttta ... ttctctgcagGTGGCGGAAATTGCAGCGGGTGCAATGAATGATTATTTGTTGATGGAGCAC
EST: gi|164002887|gb|ES162313.1|ES162313
EST:     GTTCATACAGTTTGAGGACCCTGAG                         GTGGCGGAAATTGCAGCGGGTGCAATGAATGATTATTTGTTGATGGAGCAC
genomic: GTTCATACAGTTTGAGGACCCTGAGgtatacttta ... ttctctgcagGTGGCGGAAATTGCAGCGGGTGCAATGAATGATTATTTGTTGATGGAGCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctatatatatactctagattcaattcttgacatttttatttggttctctgcagGTGGCGGAAATTGCAGCGGGTGCAATGAATGATTATTTGTTGATGGAGCACATGCTTAAAGTCCATGTCATTGAACCAGAGAATGTTAAACCCAATCT
                          tcttgac  putative branch site (score: 3)
                                             ttctctgc  putative PPT
                            ttgacatttttattt  TA-rich tract