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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcagttttatttgacccataaggtatgaaaatctaatagctattgtgtcttaagctgagcaaaccattgcttatttgtgcagCAACCTGAGTTTGTCGACCCATTAAACCAAACTGCAATGGCTTGCCCAGCTTTTCCTTTGTGCCCTCTGGCAATAACTGAGGCAGAGCGCGGGATCCCCA

Basic information

species Arabidopsis thaliana
transcript AT5G04590.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124753901|gb|EH844031.1|EH844031
EST:     AGGCCGGCTTACTG                         CAACCTGAGTTTGTCGACCCATTAAACCAAACTGCAATGGCTTGCCCAGCT
genomic: AGGCCGGCTTACTGgtaagcagtt ... atttgtgcagCAACCTGAGTTTGTCGACCCATTAAACCAAACTGCAATGGCTTGCCCAGCT
EST: gi|125168487|gb|EL193141.1|EL193141
EST:     CTGAATGGAAGCGTCCCATCACCACAGTACTTGCTCAGGCCGGCTTACTG                         CAACCTGAGTTTGTCGACCCATTAAACCAAACTGCAAT
genomic: CTGAATGGAAGCGTCCCATCACCACAGTACTTGCTCAGGCCGGCTTACTGgtaagcagtt ... atttgtgcagCAACCTGAGTTTGTCGACCCATTAAACCAAACTGCAAT
EST: gi|86060690|gb|DR356447.1|DR356447
EST:     CTGAATGGAAGCGTCCCATCACCACAGTACTTGCTCAGGCCGGCTTACTG                         CAACCTGAGTTTTGTCGACCCATT
genomic: CTGAATGGAAGCGTCCCATCACCACAGTACTTGCTCAGGCCGGCTTACTGgtaagcagtt ... atttgtgcagCAACCTGAGTTT-GTCGACCCATT
EST: gi|124720709|gb|EH812111.1|EH812111
EST:     GAATGGAAGCGTCCCATCACCACAGTACTTGCTCAGGCCGGCTTACTG                         CAACCTGAGTTTGTCGACCCATTAAA
genomic: GAATGGAAGCGTCCCATCACCACAGTACTTGCTCAGGCCGGCTTACTGgtaagcagtt ... atttgtgcagCAACCTGAGTTTGTCGACCCATTAAA
EST: gi|164020808|gb|ES108578.1|ES108578
EST:     GGCCGGCTTACTG                         CAACCTGAGTTTGTCGACCCATTAAACCAAAACTGCAATGGCTTGCCCAGC
genomic: GGCCGGCTTACTGgtaagcagtt ... atttgtgcagCAACCTGAGTTTGTCGACCCATTAAACCAAA-CTGCAATGGCTTGCCCAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaatctaatagctattgtgtcttaagctgagcaaaccattgcttatttgtgcagCAACCTGAGTTTGTCGACCCATTAAACCAAACTGCAATGGCTTGCCCAGCTTTTCCTTTGTGCCCTCTGGCAATAACTGAGGCAGAGCGCGGGATCCCCA
   atctaat  putative branch site (score: 3)
                                          cttattt  putative PPT
                                           ttatttgt  TA-rich tract